Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 39
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 0]
    1426576 G>T  Pum=  Qui=0.0  Rio=1.0
    1426694 T>A  Pum=0.0  Qui=0.0  Rio=0.862
    1426702 G>T  Pum=  Qui=0.0  Rio=1.0

22 CpGs in target; 15 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    20.4     54        0    5.3
Qui1     Qui    98.2     57        0    7.5
Qui2     Qui    97.8     92        0    8.0
Qui3     Qui    93.3     90        0    7.7
Qui4     Qui    95.7     92        0    6.8
Rio1     Rio     3.6     83        0    7.9
Rio2     Rio     1.2     81        0    7.3
Rio3     Rio    29.8     47        0    4.5
Rio4     Rio     4.0    101        0    8.6