Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 42
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 0]
    1424328 T>C  Pum=0.0  Qui=0.0  Rio=0.864
    1424465 C>A  Pum=0.0  Qui=0.0  Rio=0.714
    1424904 C>A  Pum=  Qui=0.0  Rio=0.667

41 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     45        0    4.9
Qui1     Qui    39.4     94        0    7.1
Qui2     Qui    61.4     44        0    9.1
Qui3     Qui    47.7    111        0    9.6
Qui4     Qui    52.1     73        0    4.5
Rio1     Rio     0.0     29        0    7.1
Rio2     Rio     0.0     24        0    4.4
Rio3     Rio    12.5     24        0    5.9
Rio4     Rio     0.0     79        0    7.2