Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    1054066 G>A  Pum=0.25  Qui=0.273  Rio=0.944

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0      4        0    5.0
Qui1     Qui   100.0      6        0    6.0
Qui2     Qui    66.7      9        0   11.0
Qui3     Qui     0.0      3        0    3.0
Qui4     Qui    80.0      5        0    5.5
Rio1     Rio     0.0      4        0    5.5
Rio2     Rio     0.0      3        1    7.0
Rio3     Rio     0.0      4        0    4.0
Rio4     Rio     0.0      7        1   10.5