Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    10126614 C>T  Pum=1.0  Qui=0.026  Rio=0.931
    10126628 G>T  Pum=  Qui=0.25  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      2        1   12.0
Qui1     Qui   100.0      1        0    9.0
Qui2     Qui   100.0      3        0   13.0
Qui3     Qui     0.0      2        0   11.0
Qui4     Qui   100.0      3        0   14.0
Rio1     Rio     0.0      4        1   12.0
Rio2     Rio     0.0      2        1    5.0
Rio3     Rio    50.0      2        1   12.0
Rio4     Rio     0.0      1        1    9.0