Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     5.6     18        1   24.0
Qui1     Qui    20.0     10        0   16.0
Qui2     Qui    11.1      9        0   20.5
Qui3     Qui     7.7     13        1   19.5
Qui4     Qui    23.5     17        1   24.0
Rio1     Rio     0.0     10        1   13.5
Rio2     Rio     0.0     14        1   21.0
Rio3     Rio    11.1      9        1   12.0
Rio4     Rio     8.3     12        1   21.5