Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    10019328 C>T  Pum=1.0  Qui=0.05  Rio=0.955
    10019365 T>A  Pum=1.0  Qui=0.053  Rio=0.968

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      1        1    6.0
Qui1     Qui    66.7      3        0    9.0
Qui2     Qui    50.0      2        0    6.0
Qui3     Qui     0.0      3        0    9.0
Qui4     Qui    20.0      5        0    9.5
Rio1     Rio     0.0      5        1    9.5
Rio2     Rio     0.0      3        1    6.0
Rio3     Rio     0.0      2        1    8.0
Rio4     Rio     0.0      1        1    9.0