Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 50
  seen in >= 2 oysters: 11
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 8  [CpG-destroying: 4]
    10019069 A>T  Pum=  Qui=0.067  Rio=0.833
    10019114 T>A  Pum=  Qui=0.083  Rio=0.941
    10019252 C>T  Pum=  Qui=0.067  Rio=0.864
    10019328 C>T  Pum=1.0  Qui=0.05  Rio=0.955
    10019365 T>A  Pum=1.0  Qui=0.053  Rio=0.968
    10019640 G>A  Pum=  Qui=0.444  Rio=1.0
    10019802 A>G  Pum=0.556  Qui=0.227  Rio=0.885
    10019868 C>T  Pum=  Qui=0.273  Rio=0.857

8 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    25.0      8        2    5.1
Qui1     Qui    57.1     28        0    6.0
Qui2     Qui    81.8     22        0    4.6
Qui3     Qui    53.3     30        0    8.6
Qui4     Qui    61.8     34        0    6.3
Rio1     Rio    44.4     27        2    8.7
Rio2     Rio    31.2     16        2    7.1
Rio3     Rio    43.8     16        2    5.7
Rio4     Rio    43.8     16        2    6.2