Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 8
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 0]
    6947641 T>C  Pum=0.0  Qui=0.512  Rio=0.0
    6947652 A>G  Pum=0.0  Qui=0.524  Rio=0.0
    6947677 T>C  Pum=0.0  Qui=0.611  Rio=0.0
    6947738 A>T  Pum=0.0  Qui=0.595  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      4        0   13.0
Qui1     Qui    25.0      4        0   12.0
Qui2     Qui    33.3      3        0   10.5
Qui3     Qui    66.7      3        0    8.0
Qui4     Qui    60.0      5        0    8.0
Rio1     Rio   100.0      5        0   14.0
Rio2     Rio   100.0      4        0    6.0
Rio3     Rio   100.0      5        0    8.0
Rio4     Rio   100.0      7        0   15.0