Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    6568595 A>T  Pum=0.0  Qui=0.647  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum              0        0   14.5
Qui1     Qui              0        0   11.0
Qui2     Qui              0        0    9.5
Qui3     Qui              0        0   16.5
Qui4     Qui              0        0   20.0
Rio1     Rio              0        0   13.0
Rio2     Rio              0        0    8.0
Rio3     Rio              0        0   10.0
Rio4     Rio              0        0   13.0