Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    6564741 A>G  Pum=0.0  Qui=0.519  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum              0        0   15.0
Qui1     Qui              0        0   26.5
Qui2     Qui              0        0   36.5
Qui3     Qui              0        0   37.0
Qui4     Qui              0        0   42.0
Rio1     Rio              0        0   26.0
Rio2     Rio              0        0   13.5
Rio3     Rio              0        0   10.0
Rio4     Rio              0        0   17.5