Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 11
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

28 CpGs in target; 24 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    83.2    161        0   10.8
Qui1     Qui    30.8     78        0    6.7
Qui2     Qui    38.6     70        0    6.8
Qui3     Qui    29.3    133        0    9.1
Qui4     Qui    15.9    126        0    8.4
Rio1     Rio    78.7    202        0   10.7
Rio2     Rio    73.2     97        0    8.6
Rio3     Rio    69.5    105        0    6.9
Rio4     Rio    66.0    103        0    8.3