Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 2]
    6271673 G>A  Pum=  Qui=0.536  Rio=0.0
    6271681 G>T  Pum=  Qui=0.577  Rio=0.0
    6271722 G>A  Pum=  Qui=0.68  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      3        0    9.5
Qui1     Qui    40.0      5        0    5.5
Qui2     Qui    44.4      9        0   11.5
Qui3     Qui    37.5      8        0   14.0
Qui4     Qui     0.0      3        0    8.0
Rio1     Rio   100.0      8        0   16.0
Rio2     Rio    87.5      8        0    9.0
Rio3     Rio   100.0      8        0   10.0
Rio4     Rio   100.0      9        0   12.5