Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    6099399 G>A  Pum=0.0  Qui=0.571  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0      4        0    8.0
Qui1     Qui     0.0      2        0    9.0
Qui2     Qui    40.0      5        0   15.0
Qui3     Qui    28.6      7        0   18.0
Qui4     Qui    14.3      7        0   11.0
Rio1     Rio    62.5      8        0   18.0
Rio2     Rio    75.0      8        0   12.5
Rio3     Rio    87.5      8        0   19.0
Rio4     Rio    75.0      4        0   16.0