Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 41
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

29 CpGs in target; 15 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    40.2    722        0   20.3
Qui1     Qui    47.0    521        0   16.6
Qui2     Qui    36.8    845        0   18.9
Qui3     Qui    55.0    500        0   15.7
Qui4     Qui    26.4    592        0   16.3
Rio1     Rio    20.8    567        0   15.3
Rio2     Rio    25.4    343        1    8.1
Rio3     Rio    38.7    776        0   18.2
Rio4     Rio    30.4    711        2   18.9