Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 29
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

15 CpGs in target; 8 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     52        0    8.4
Qui1     Qui     0.0     41        0   10.3
Qui2     Qui     0.0     26        0    5.0
Qui3     Qui     0.0     44        0   10.0
Qui4     Qui     7.7     26        0    8.2
Rio1     Rio     9.9     71        0    7.4
Rio2     Rio    33.9     62        0    9.0
Rio3     Rio    48.1     54        0    9.2
Rio4     Rio    25.9     58        0    8.5