Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 41
  seen in >= 2 oysters: 13
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

14 CpGs in target; 11 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    85.7     98        0   12.8
Qui1     Qui    52.2     90        0   14.2
Qui2     Qui    89.5     38        0    6.4
Qui3     Qui    48.6    107        0   13.7
Qui4     Qui    84.6     39        0    6.6
Rio1     Rio    87.5     32        0   10.9
Rio2     Rio    92.3     39        0    8.2
Rio3     Rio    87.7     65        0    8.4
Rio4     Rio    83.7     86        0   12.4