Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 41
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    14074361 T>A  Pum=0.333  Qui=0.9  Rio=0.054

33 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    11.3    142        0   10.7
Qui1     Qui    19.2     52        0    3.7
Qui2     Qui    25.0     16        0    5.6
Qui3     Qui     0.0     57        0    6.6
Qui4     Qui    18.2     22        0    3.6
Rio1     Rio     6.1    114        0   10.0
Rio2     Rio     6.4     78        0    5.8
Rio3     Rio    30.8     65        0    4.6
Rio4     Rio    12.1    124        0   11.5