Settings: Output files: "../output/12-CG-illumina/merged_out.fasta.index.*.ht2" Line rate: 7 (line is 128 bytes) Lines per side: 1 (side is 128 bytes) Offset rate: 4 (one in 16) FTable chars: 10 Strings: unpacked Local offset rate: 3 (one in 8) Local fTable chars: 6 Local sequence length: 57344 Local sequence overlap between two consecutive indexes: 1024 Endianness: little Actual local endianness: little Sanity checking: disabled Assertions: disabled Random seed: 0 Sizeofs: void*:8, int:4, long:8, size_t:8 Input files DNA, FASTA: ../data/merged_out.fasta Reading reference sizes Time reading reference sizes: 00:00:06 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time to join reference sequences: 00:00:02 Time to read SNPs and splice sites: 00:00:01 Generation 0 (1180393058 -> 1180393058 nodes, 0 ranks) COUNTED NEW NODES: 0 COUNTED TEMP NODES: 0 RESIZED NODES: 2 RESIZED NODES: 0 MADE NEW NODES: 0 Generation 1 (1180470194 -> 1180470194 nodes, 0 ranks) COUNTED NEW NODES: 0 COUNTED TEMP NODES: 0 RESIZED NODES: 2 RESIZED NODES: 0 MADE NEW NODES: 0 Generation 2 (1180624523 -> 1180624523 nodes, 0 ranks) COUNTED NEW NODES: 0 COUNTED TEMP NODES: 0 RESIZED NODES: 2 RESIZED NODES: 0 MADE NEW NODES: 0 Generation 3 (1180933447 -> 1180933447 nodes, 0 ranks) BUILT FROM_INDEX: 1 COUNTED NEW NODES: 0 COUNTED TEMP NODES: 0 RESIZED NODES: 2 RESIZED NODES: 0 MADE NEW NODES: 0 RESIZE NODES: 4 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 1 1 49099141 2 41147401 1 38368039 5 28883876 3 39456762 6 31246177 2 31254259 5 36146887 2 44810484 1 38369561 38 40770204 2 40172629 7 30004369 8 30413402 7 35364179 2 35327052 38 35634773 2 32126883 7 23829177 7 29104242 7 42690708 2 27611463 38 51712309 2 34728816 1 36090382 5 25514009 2 20631030 1 21659075 5 25520263 2 26558102 1 28913045 5 30610779 1 23393553 1 25426802 1 48962716 0 0 0 0 18 1 46 1 82 1 FINISHED RECURSIVE SORTS: 3 SORT NODES: 4 MERGE, UPDATE RANK: 11 Generation 4 (1181552552 -> 1181315166 nodes, 406786054 ranks) ALLOCATE FROM_TABLE: 3 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 1 8 33581072 8 33597551 7 29394271 7 29409319 7 29400148 7 29387314 7 29394565 7 29391144 7 29390571 7 29388033 7 29385754 7 29385440 7 29380357 7 29384164 7 29386680 7 29387377 7 29381380 7 29386160 7 29400336 7 29404863 7 29401045 7 29392408 7 29389199 7 29381401 7 29402918 7 29388094 7 29389431 7 29369550 7 29371313 7 29369008 7 29369779 7 29370617 7 29370902 7 29366017 7 29365629 7 29367660 7 29369816 7 29376596 7 29380611 7 26906673 FINISHED RECURSIVE SORTS: 1 BUILD TABLE: 2 BUILD INDEX: 1 COUNTED NEW NODES: 1 COUNTED TEMP NODES: 0 RESIZED NODES: 1 RESIZED NODES: 0 MADE NEW NODES: 2 MERGEUPDATERANK: 16 TOTAL TIME: 26 Generation 5 (1181678931 -> 1181433505 nodes, 691302585 ranks) ALLOCATE FROM_TABLE: 0 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 0 8 33583179 8 33599291 7 29393693 7 29409036 7 29400701 7 29387760 7 29395270 7 29392045 7 29391530 7 29390340 7 29392902 7 29393501 7 29388143 7 29392393 7 29390396 7 29393992 7 29385452 7 29393483 7 29403781 7 29405325 7 29401041 7 29398349 7 29399021 7 29384744 7 29404197 7 29389439 7 29389744 7 29373330 7 29375832 7 29372227 7 29371617 7 29374791 7 29376527 7 29367213 7 29366806 7 29368762 7 29371318 7 29378030 7 29380926 7 26907378 FINISHED RECURSIVE SORTS: 2 BUILD TABLE: 2 BUILD INDEX: 1 COUNTED NEW NODES: 0 COUNTED TEMP NODES: 0 RESIZED NODES: 2 RESIZED NODES: 0 MADE NEW NODES: 2 MERGEUPDATERANK: 10 TOTAL TIME: 17 Generation 6 (1181733932 -> 1181700082 nodes, 828567982 ranks) ALLOCATE FROM_TABLE: 0 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 1 8 33586675 8 33603685 7 29395040 7 29411516 7 29403467 7 29390110 7 29398084 7 29395150 7 29394260 7 29394652 7 29406965 7 29409667 7 29404086 7 29409153 7 29398911 7 29408178 7 29394801 7 29408507 7 29410232 7 29409625 7 29404264 7 29411198 7 29419030 7 29392104 7 29409449 7 29393248 7 29392175 7 29380758 7 29385273 7 29378445 7 29375664 7 29382829 7 29387798 7 29369062 7 29368602 7 29370769 7 29374217 7 29380708 7 29382254 7 26909471 FINISHED RECURSIVE SORTS: 1 BUILD TABLE: 2 BUILD INDEX: 1 COUNTED NEW NODES: 0 COUNTED TEMP NODES: 0 RESIZED NODES: 2 RESIZED NODES: 0 MADE NEW NODES: 2 MERGEUPDATERANK: 8 TOTAL TIME: 15 Generation 7 (1182204123 -> 1182154677 nodes, 930791399 ranks) ALLOCATE FROM_TABLE: 0 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 0 8 33590586 8 33608375 7 29396755 7 29414085 7 29406897 7 29392986 7 29401586 7 29399355 7 29397564 7 29398879 7 29432261 7 29438467 7 29434113 7 29440650 7 29414236 7 29435049 7 29412087 7 29435451 7 29419378 7 29415849 7 29408881 7 29434490 7 29457013 7 29405330 7 29417002 7 29398997 7 29395216 7 29394507 7 29403436 7 29389762 7 29383119 7 29397544 7 29409227 7 29371704 7 29371394 7 29373609 7 29378270 7 29384170 7 29384116 7 26912281 FINISHED RECURSIVE SORTS: 1 BUILD TABLE: 1 BUILD INDEX: 1 COUNTED NEW NODES: 1 COUNTED TEMP NODES: 0 RESIZED NODES: 1 RESIZED NODES: 0 MADE NEW NODES: 1 MERGEUPDATERANK: 7 TOTAL TIME: 12 Generation 8 (1183006810 -> 1182918801 nodes, 1000467624 ranks) ALLOCATE FROM_TABLE: 0 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 0 8 33595515 8 33613129 7 29398258 7 29417466 7 29410922 7 29396233 7 29406179 7 29406003 7 29400375 7 29402119 7 29476213 7 29487543 7 29487087 7 29498144 7 29441605 7 29484663 7 29443493 7 29481393 7 29431189 7 29422779 7 29414983 7 29473674 7 29528711 7 29430766 7 29426192 7 29408187 7 29399382 7 29418623 7 29436277 7 29410230 7 29396820 7 29423773 7 29449671 7 29375057 7 29374411 7 29375882 7 29384223 7 29389165 7 29386414 7 26916052 FINISHED RECURSIVE SORTS: 2 BUILD TABLE: 2 BUILD INDEX: 0 COUNTED NEW NODES: 1 COUNTED TEMP NODES: 0 RESIZED NODES: 2 RESIZED NODES: 0 MADE NEW NODES: 1 MERGEUPDATERANK: 5 TOTAL TIME: 11 Generation 9 (1184384783 -> 1184145055 nodes, 1045325887 ranks) ALLOCATE FROM_TABLE: 0 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 0 8 33600405 8 33617474 7 29399828 7 29420324 7 29414962 7 29399623 7 29411633 7 29416039 7 29403312 7 29405413 7 29545308 7 29566746 7 29567832 7 29593350 7 29489358 7 29569352 7 29495056 7 29559449 7 29445046 7 29428902 7 29421519 7 29536597 7 29658772 7 29475485 7 29434984 7 29419899 7 29404332 7 29461567 7 29493927 7 29445452 7 29420321 7 29467459 7 29522084 7 29379883 7 29376954 7 29377068 7 29392914 7 29396628 7 29389772 7 26920026 FINISHED RECURSIVE SORTS: 1 BUILD TABLE: 1 BUILD INDEX: 2 COUNTED NEW NODES: 0 COUNTED TEMP NODES: 0 RESIZED NODES: 1 RESIZED NODES: 0 MADE NEW NODES: 1 MERGEUPDATERANK: 4 TOTAL TIME: 9 Generation 10 (1186642314 -> 1186054765 nodes, 1074597782 ranks) ALLOCATE FROM_TABLE: 0 COUNT NUMBER IN EACH BIN: 1 FINISHED FIRST ROUND: 0 8 33604051 8 33621198 8 33608709 7 29417348 7 29420819 7 29412315 7 29441715 7 29398377 7 29404256 7 29414868 7 29669125 7 29747369 7 29683171 7 29709961 7 29570789 7 29709360 7 29548003 7 29693472 7 29457801 7 29419876 7 29432032 7 29680290 7 29856850 7 29522624 7 29442556 7 29430546 7 29421783 7 29538678 7 29566543 7 29518538 7 29441911 7 29541368 7 29640209 7 29375660 7 29383705 7 29376724 7 29415388 7 29393396 7 29398673 6 22724708 FINISHED RECURSIVE SORTS: 1 BUILD TABLE: 2 BUILD INDEX: 1 COUNTED NEW NODES: 0 COUNTED TEMP NODES: 0 RESIZED NODES: 2 RESIZED NODES: 0 MADE NEW NODES: 1 MERGEUPDATERANK: 4 TOTAL TIME: 10 Generation 11 (1190194996 -> 1188860477 nodes, 1096963645 ranks) ALLOCATE FROM_TABLE: 0 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 0 8 33610846 8 33622031 8 33611339 7 29416026 7 29431868 7 29424105 7 29463416 8 33603524 7 29405141 7 29423271 7 29883390 7 30107341 7 29721884 7 29920134 7 29764035 7 29846505 7 29612760 7 29871766 7 29479310 7 29418133 7 29448227 7 29975755 7 30146994 7 29552002 7 29417457 7 29450934 7 29505895 7 29627211 7 29643838 7 29641025 7 29533274 7 29619317 7 29761098 7 29374298 7 29384474 7 29378693 7 29433719 7 29393171 6 25204121 6 22732149 FINISHED RECURSIVE SORTS: 1 BUILD TABLE: 1 BUILD INDEX: 1 COUNTED NEW NODES: 1 COUNTED TEMP NODES: 0 RESIZED NODES: 1 RESIZED NODES: 0 MADE NEW NODES: 1 MERGEUPDATERANK: 4 TOTAL TIME: 9 Generation 12 (1195221918 -> 1192533970 nodes, 1117797536 ranks) ALLOCATE FROM_TABLE: 0 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 0 8 33617827 8 33622130 8 33615004 8 33619202 7 29471705 7 29414378 7 29480406 7 29412605 7 29405826 7 29427794 7 30129079 7 30456636 7 29903845 7 30208929 7 29960716 7 30039784 7 29765258 7 30086894 7 29502160 7 29419417 7 29460654 7 30283971 7 30571842 7 29622789 7 29416086 7 29478002 7 29578673 7 29768892 7 29761599 7 29801439 7 29629969 7 29700223 7 29962591 7 29377430 7 29384712 7 29379584 7 29447160 7 29394031 6 25210760 6 22743968 FINISHED RECURSIVE SORTS: 1 BUILD TABLE: 1 BUILD INDEX: 1 COUNTED NEW NODES: 0 COUNTED TEMP NODES: 0 RESIZED NODES: 2 RESIZED NODES: 0 MADE NEW NODES: 1 MERGEUPDATERANK: 3 TOTAL TIME: 8 Generation 13 (1201386905 -> 1196819424 nodes, 1139895653 ranks) ALLOCATE FROM_TABLE: 0 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 1 8 33627199 8 33622130 8 33615226 8 33619202 8 33693712 7 29417678 7 29500052 7 29422830 7 29400955 7 29470444 7 30633897 7 30773804 7 30161098 7 30449719 7 30171546 7 30181166 7 30202729 7 30162923 7 29465472 7 29417244 7 29464256 7 31048459 7 30762470 7 29682482 7 29411604 7 29534613 7 29655054 7 30038749 7 29798028 7 29933192 7 29714993 7 30006387 7 29985143 7 29379872 7 29382092 7 29379629 7 29471637 6 25193977 6 25204305 6 22763456 FINISHED RECURSIVE SORTS: 1 BUILD TABLE: 2 BUILD INDEX: 1 COUNTED NEW NODES: 0 COUNTED TEMP NODES: 0 RESIZED NODES: 2 RESIZED NODES: 0 MADE NEW NODES: 0 MERGEUPDATERANK: 3 TOTAL TIME: 8 Generation 14 (1207310508 -> 1201005152 nodes, 1163361533 ranks) ALLOCATE FROM_TABLE: 0 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 1 8 33622297 8 33622130 8 33615225 8 33619202 8 33699724 8 33610677 7 29475271 7 29429644 7 29401186 7 29855236 7 30695331 7 30988873 7 30852589 7 30744753 7 30272438 7 30292593 7 30583563 7 30126460 7 29465641 7 29420472 7 29568093 7 31975228 7 30772607 7 29711081 7 29423489 7 29488716 7 29855690 7 30074545 7 29916575 7 30209842 7 29674999 7 30392605 7 29971533 7 29378863 7 29379347 7 29378548 6 25293595 6 25193977 6 25200949 6 22751565 FINISHED RECURSIVE SORTS: 1 BUILD TABLE: 2 BUILD INDEX: 1 COUNTED NEW NODES: 0 COUNTED TEMP NODES: 0 RESIZED NODES: 2 RESIZED NODES: 0 MADE NEW NODES: 0 MERGEUPDATERANK: 3 TOTAL TIME: 8 Generation 15 (1210809944 -> 1203994026 nodes, 1184085777 ranks) ALLOCATE FROM_TABLE: 0 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 1 8 33622297 8 33622130 8 33615225 8 33619202 8 33714717 8 33609260 8 33664914 7 29412894 7 29403226 7 30268226 7 30490053 7 31172026 7 31449332 7 30822109 7 30756873 7 30230567 7 30689613 7 30145301 7 29464502 7 29422192 7 29840083 7 32392349 7 31027451 7 29647149 7 29425262 7 29479932 7 30066304 7 30097095 7 30384048 7 29837739 7 29816493 7 30541517 7 29852072 7 29377393 7 29382651 6 25179834 6 25305783 6 25193977 6 25200949 6 22751286 FINISHED RECURSIVE SORTS: 1 BUILD TABLE: 2 BUILD INDEX: 1 COUNTED NEW NODES: 0 COUNTED TEMP NODES: 0 RESIZED NODES: 2 RESIZED NODES: 0 MADE NEW NODES: 0 MERGEUPDATERANK: 3 TOTAL TIME: 8 Generation 16 (1210805108 -> 1204726997 nodes, 1198285887 ranks) ALLOCATE FROM_TABLE: 0 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 0 8 33622297 8 33622130 8 33615225 8 33619202 8 33714717 8 33609260 8 33664914 7 29409727 7 29403226 7 30203395 7 30515803 7 31278044 7 31597995 7 30900712 7 30980764 7 30256558 7 30823723 7 30141579 7 29464502 7 29422192 7 29893959 7 32552217 7 31076357 7 29632570 7 29425262 7 29479932 7 30097776 7 30042397 7 30327895 7 29836716 7 29840002 7 30484826 7 29801586 7 29377393 7 29382651 6 25179834 6 25283447 6 25193977 6 25200949 6 22751286 FINISHED RECURSIVE SORTS: 1 BUILD TABLE: 1 BUILD INDEX: 2 COUNTED NEW NODES: 0 COUNTED TEMP NODES: 0 RESIZED NODES: 0 RESIZED NODES: 0 MADE NEW NODES: 0 MERGEUPDATERANK: 2 TOTAL TIME: 5 Generation 17 (1208116911 -> 1204373484 nodes, 1203396030 ranks) ALLOCATE FROM_TABLE: 0 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 1 8 33622297 8 33622130 8 33615225 8 33619202 8 33691131 8 33609260 8 33664914 7 29409727 7 29403226 7 30154407 7 30520920 7 31301388 7 31406727 7 30794643 7 31036774 7 30126392 7 30973025 7 30150558 7 29464502 7 29422192 7 29921310 7 32523605 7 31127948 7 29632570 7 29425262 7 29479932 7 30143506 7 29995994 7 30294721 7 29760655 7 29843168 7 30464524 7 29782112 7 29377393 7 29382651 6 25179834 6 25283447 6 25193977 6 25200949 6 22751286 FINISHED RECURSIVE SORTS: 1 BUILD TABLE: 2 BUILD INDEX: 1 COUNTED NEW NODES: 0 COUNTED TEMP NODES: 0 RESIZED NODES: 0 RESIZED NODES: 0 MADE NEW NODES: 1 MERGEUPDATERANK: 2 TOTAL TIME: 6 Generation 18 (1205387980 -> 1204450831 nodes, 1204416858 ranks) ALLOCATE FROM_TABLE: 0 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 0 8 33622297 8 33622130 8 33615225 8 33619202 8 33691131 8 33609260 8 33664914 7 29409727 7 29403226 7 30146000 7 30459096 7 31406295 7 31250987 7 30794643 7 30966724 7 30113802 7 31186957 7 30142151 7 29464502 7 29422192 7 29954325 7 32540594 7 31127948 7 29632570 7 29425262 7 29479932 7 30205838 7 29995994 7 30257911 7 29760655 7 29843168 7 30464524 7 29782112 7 29377393 7 29382651 6 25179834 6 25283447 6 25193977 6 25200949 6 22751286 FINISHED RECURSIVE SORTS: 2 BUILD TABLE: 2 BUILD INDEX: 1 COUNTED NEW NODES: 0 COUNTED TEMP NODES: 0 RESIZED NODES: 0 RESIZED NODES: 0 MADE NEW NODES: 0 MERGEUPDATERANK: 2 TOTAL TIME: 5 Generation 19 (1204450831 -> 1204416858 nodes, 1204416858 ranks) COUNT NUMBER IN EACH BIN: 1 FINISHED FIRST ROUND: 0 8 33622297 8 33622130 8 33615225 8 33619202 8 33691131 8 33609260 8 33664914 7 29409727 7 29403226 7 30146000 7 30459096 7 31372322 7 31250987 7 30794643 7 30966724 7 30113802 7 31186957 7 30142151 7 29464502 7 29422192 7 29954325 7 32540594 7 31127948 7 29632570 7 29425262 7 29479932 7 30205838 7 29995994 7 30257911 7 29760655 7 29843168 7 30464524 7 29782112 7 29377393 7 29382651 6 25179834 6 25283447 6 25193977 6 25200949 6 22751286 FINISHED RECURSIVE SORTS: 1 Generating edges... NODE.TO -> GENOME POS: 1 BUILD FROM_INDEX 1 COUNTED NEW EDGES: 1 MADE NEW EDGES: 2 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 0 7 10551522 7 11161169 7 11068662 6 10257064 7 10787384 8 9915169 7 9536179 8 10407476 7 9791376 8 10513279 7 9418059 7 9845853 8 10751126 7 10488927 7 10443937 7 9933549 8 9784258 8 10291453 8 9778599 7 9300144 7 9399346 7 9306133 8 9634637 8 9773827 8 9247064 8 9353974 7 9282911 7 10017474 7 10308167 6 9766616 7 9287278 8 9485120 7 8859179 7 9073100 7 9058027 7 8597576 7 8211931 7 8613111 6 7884692 6 6985254 FINISHED RECURSIVE SORTS: 1 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 0 7 5965482 7 5712194 7 5819435 7 6017122 7 5908249 6 5430229 6 5983069 6 5727518 6 6173593 6 5823333 7 5432706 6 5392974 6 5831158 6 5454543 7 5317131 8 5962492 8 5845827 5 5762047 6 5575689 6 5242841 6 5197927 7 5748066 11 5468352 10 5096206 9 5325491 11 5286845 10 5292841 9 5229490 8 5486956 9 5270717 8 5290589 6 5283923 7 5317970 6 4800702 6 5020567 7 4720545 7 4645816 7 4867301 7 4589508 7 3801707 FINISHED RECURSIVE SORTS: 0 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 0 7 5494915 7 5455913 7 5620213 8 5520589 8 5894251 7 5682779 7 5631925 7 5808208 8 5774818 8 5616220 8 5773245 9 5989325 9 5780552 8 5342296 8 5655934 9 6001171 8 5389225 9 5756897 7 5289171 7 5618371 7 5270530 6 5352273 6 6663826 6 5215972 7 5677704 7 5084238 6 5129854 7 5764597 7 5595827 7 5390443 6 4795287 7 5254323 7 5314403 7 5488521 6 4822737 7 5037047 7 4510220 7 4761087 6 4096886 6 3830693 FINISHED RECURSIVE SORTS: 1 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 0 10 10395224 10 9924464 11 10615816 8 10302457 9 10169625 10 10140521 9 10101638 7 9801040 9 10506496 8 10116724 7 9610218 8 10317233 8 10307838 8 9952506 8 10623636 7 10312705 7 9993295 6 9711560 7 10594000 6 10157531 7 10385342 7 9307156 6 10864776 6 10019687 5 8921302 7 9675555 7 9242966 8 9419602 7 9593535 6 8867108 7 9809021 7 9734831 7 8838781 7 9664501 5 8136769 5 8404435 5 8165348 5 7910080 5 7748164 6 7693632 FINISHED RECURSIVE SORTS: 0 SORTED NEW EDGES: 3 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 1 8 33554432 8 33554432 8 33554432 8 33554432 8 33554432 8 33554432 8 33554432 8 33554432 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 29360128 7 25817434 FINISHED RECURSIVE SORTS: 1 RE-SORTED NODES: 4 PROCESS EDGES: 3 REMOVE Y: 1 COUNT NUMBER IN EACH BIN: 0 FINISHED FIRST ROUND: 0 8 33554854 8 33554915 8 33555109 8 33554909 8 33556792 8 33558615 8 33562839 8 33562692 7 29360627 7 29360838 7 29360850 7 29360914 7 29361080 7 29364972 7 29362292 7 29364322 7 29366243 7 29362957 7 29367514 7 29364407 7 29361997 7 29362208 7 29362029 7 29363293 7 29362547 7 29361635 7 29361300 7 29360397 7 29361492 7 29360342 7 29360786 7 29360488 7 29360597 7 29360683 7 29360690 7 29360723 7 29360638 7 29360958 7 29360751 7 25818063 FINISHED RECURSIVE SORTS: 1 SORT, Make index: 3 TOTAL: 19 Allocating ftab, absorbFtab Entering GFM loop Exited GFM loop fchr[A]: 0 fchr[C]: 386170602 fchr[G]: 602289753 fchr[T]: 818442239 fchr[$]: 1204499357 Exiting GFM::buildToDisk() Returning from initFromVector Wrote 745497834 bytes to primary GFM file: ../output/12-CG-illumina/merged_out.fasta.index.1.ht2 Wrote 301104220 bytes to secondary GFM file: ../output/12-CG-illumina/merged_out.fasta.index.2.ht2 Re-opening _in1 and _in2 as input streams Returning from GFM constructor Warning: a local graph exploded (offset: 162786108, length: 57144) Warning: a local graph exploded (offset: 298245525, length: 57344) Warning: a local graph exploded (offset: 298245525, length: 57344) Warning: a local graph exploded (offset: 298245525, length: 57344) Warning: a local graph exploded (offset: 298245525, length: 57344) Warning: a local graph exploded (offset: 364842922, length: 57244) Warning: a local graph exploded (offset: 364899142, length: 57244) Warning: a local graph exploded (offset: 364899142, length: 57244) Warning: a local graph exploded (offset: 364899142, length: 57244) Warning: a local graph exploded (offset: 364899142, length: 57244) Warning: a local graph exploded (offset: 615096765, length: 57244) Warning: a local graph exploded (offset: 615096765, length: 57244) Warning: a local graph exploded (offset: 851409082, length: 57244) Returning from initFromVector Wrote 634903711 bytes to primary GFM file: ../output/12-CG-illumina/merged_out.fasta.index.5.ht2 Wrote 300610712 bytes to secondary GFM file: ../output/12-CG-illumina/merged_out.fasta.index.6.ht2 Re-opening _in5 and _in5 as input streams Returning from HGFM constructor Headers: len: 1180315922 gbwtLen: 1204499358 nodes: 1204416857 sz: 590157961 gbwtSz: 602249680 lineRate: 7 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 0 eftabSz: 0 ftabLen: 1048577 ftabSz: 4194308 offsLen: 75276054 offsSz: 301104216 lineSz: 128 sideSz: 128 sideGbwtSz: 104 sideGbwtLen: 208 numSides: 5790863 numLines: 5790863 gbwtTotLen: 741230464 gbwtTotSz: 741230464 reverse: 0 linearFM: No Total time for call to driver() for forward index: 00:08:43