[2025-08-05 14:57:12,741] multiqc [DEBUG ] This is MultiQC v1.12 [2025-08-05 14:57:12,741] multiqc [DEBUG ] No MultiQC config found: /opt/anaconda/anaconda3/lib/python3.9/site-packages/multiqc_config.yaml [2025-08-05 14:57:12,741] multiqc [DEBUG ] No MultiQC config found: /home/sr320/.multiqc_config.yaml [2025-08-05 14:57:12,741] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-08-05 14:57:12,741] multiqc [DEBUG ] Command used: /opt/anaconda/anaconda3/bin/multiqc . [2025-08-05 14:57:13,428] multiqc [WARNING] MultiQC Version v1.30 now available! [2025-08-05 14:57:13,428] multiqc [DEBUG ] Command : /opt/anaconda/anaconda3/bin/multiqc . [2025-08-05 14:57:13,428] multiqc [DEBUG ] Working dir : /home/shared/16TB_HDD_01/sr320/github/project-ostrea-chil/output/00-qc/trimmed [2025-08-05 14:57:13,429] multiqc [DEBUG ] Template : default [2025-08-05 14:57:13,429] multiqc [DEBUG ] Running Python 3.9.7 (default, Sep 16 2021, 13:09:58) [GCC 7.5.0] [2025-08-05 14:57:13,430] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2025-08-05 14:57:13,430] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpsk0amxle [2025-08-05 14:57:13,842] multiqc [INFO ] Search path : /home/shared/16TB_HDD_01/sr320/github/project-ostrea-chil/output/00-qc/trimmed [2025-08-05 14:57:13,855] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Rio_barcode14_combined_clean.fastq [2025-08-05 14:57:13,874] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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[2025-08-05 14:57:13,966] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Rio_barcode14_1_combined_clean_fastqc.html [2025-08-05 14:57:13,966] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: Rio_barcode14_1_combined_clean_fastqc.html [2025-08-05 14:57:13,966] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Rio_barcode14_1_combined_clean_fastqc.html [2025-08-05 14:57:13,966] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: Rio_barcode14_1_combined_clean_fastqc.html [2025-08-05 14:57:13,967] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: Rio_barcode14_1_combined_clean_fastqc.html [2025-08-05 14:57:13,967] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 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Rio_barcode03_1_combined_clean_fastqc.html [2025-08-05 14:57:14,137] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: Rio_barcode03_1_combined_clean_fastqc.html [2025-08-05 14:57:14,137] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: Rio_barcode03_1_combined_clean_fastqc.html [2025-08-05 14:57:14,162] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Rio_barcode03_1_combined_clean_fastqc.html [2025-08-05 14:57:14,165] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Pum_barcode13_1_combined_clean_fastqc.html [2025-08-05 14:57:14,166] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Pum_barcode13_1_combined_clean_fastqc.html [2025-08-05 14:57:14,166] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Pum_barcode13_1_combined_clean_fastqc.html [2025-08-05 14:57:14,167] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: Pum_barcode13_1_combined_clean_fastqc.html [2025-08-05 14:57:14,167] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Pum_barcode13_1_combined_clean_fastqc.html [2025-08-05 14:57:14,167] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: Pum_barcode13_1_combined_clean_fastqc.html [2025-08-05 14:57:14,167] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: Pum_barcode13_1_combined_clean_fastqc.html [2025-08-05 14:57:14,167] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: Pum_barcode13_1_combined_clean_fastqc.html [2025-08-05 14:57:14,167] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: Pum_barcode13_1_combined_clean_fastqc.html [2025-08-05 14:57:14,167] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: Pum_barcode13_1_combined_clean_fastqc.html [2025-08-05 14:57:14,190] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Pum_barcode13_1_combined_clean_fastqc.html [2025-08-05 14:57:14,194] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Rio_barcode14_combined_clean_fastqc.html [2025-08-05 14:57:14,194] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Rio_barcode14_combined_clean_fastqc.html [2025-08-05 14:57:14,194] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Rio_barcode14_combined_clean_fastqc.html [2025-08-05 14:57:14,195] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: Rio_barcode14_combined_clean_fastqc.html [2025-08-05 14:57:14,195] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Rio_barcode14_combined_clean_fastqc.html [2025-08-05 14:57:14,195] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: Rio_barcode14_combined_clean_fastqc.html [2025-08-05 14:57:14,195] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: Rio_barcode14_combined_clean_fastqc.html [2025-08-05 14:57:14,195] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: Rio_barcode14_combined_clean_fastqc.html [2025-08-05 14:57:14,195] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: Rio_barcode14_combined_clean_fastqc.html [2025-08-05 14:57:14,195] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: Rio_barcode14_combined_clean_fastqc.html [2025-08-05 14:57:14,218] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Rio_barcode14_combined_clean_fastqc.html [2025-08-05 14:57:14,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Qui_barcode01_1_combined_clean.fastq [2025-08-05 14:57:14,220] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Rio_barcode03_combined_clean.fastq [2025-08-05 14:57:15,225] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-05 14:57:15,225] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-05 14:57:15,362] multiqc.modules.fastqc.fastqc [INFO ] Found 12 reports [2025-08-05 14:57:15,534] multiqc [INFO ] Compressing plot data [2025-08-05 14:57:15,680] multiqc [INFO ] Report : multiqc_report.html [2025-08-05 14:57:15,680] multiqc [INFO ] Data : multiqc_data [2025-08-05 14:57:15,680] multiqc [DEBUG ] Moving data file from '/tmp/tmpsk0amxle/multiqc_data' to '/home/shared/16TB_HDD_01/sr320/github/project-ostrea-chil/output/00-qc/trimmed/multiqc_data' [2025-08-05 14:57:15,904] multiqc [INFO ] MultiQC complete