| Name | Last modified | Size | Description | |
|---|---|---|---|---|
| Parent Directory | - | |||
| 05-synteny.Rmd | 2026-10-08 21:13 | 718 | ||
| 06-Annot-novel.Rmd | 2026-10-08 21:13 | 723 | ||
| 15-GN020540-fetch.R | 2026-10-10 16:52 | 968 | ||
| 03-annotation.Rmd | 2026-10-08 21:13 | 1.3K | ||
| 13.1-wgbs-genome-pre..> | 2026-10-10 16:52 | 1.3K | ||
| 13-wgbs-submit.sh | 2026-10-10 16:52 | 1.5K | ||
| 11-extract_sequences.sh | 2026-10-08 21:13 | 1.9K | ||
| 01-repro-annot.Rmd | 2026-10-08 21:13 | 2.0K | ||
| 11-identify_unmatche..> | 2026-10-08 21:13 | 2.1K | ||
| 10-illumina.Rmd | 2026-10-08 21:13 | 2.1K | ||
| 13-wgbs-read-overlap.sh | 2026-10-10 16:52 | 2.8K | ||
| 13.11-wgbs-hapa-lift..> | 2026-10-10 16:52 | 3.0K | ||
| 13.3-wgbs-qc-summary.sh | 2026-10-10 16:52 | 3.1K | ||
| 13.7-wgbs-bs-snp-che..> | 2026-10-09 20:20 | 3.2K | ||
| 11-extract_and_blast..> | 2026-10-08 21:13 | 3.3K | ||
| 13.9-wgbs-bs-snp-che..> | 2026-10-10 16:52 | 3.4K | ||
| 00-qc.Rmd | 2026-10-08 21:13 | 3.5K | ||
| 13.0-wgbs-config.sh | 2026-10-10 16:52 | 3.9K | ||
| 13.7-wgbs-bs-snp-che..> | 2026-10-09 20:20 | 4.0K | ||
| 13.5-wgbs-gene-annot..> | 2026-10-10 16:52 | 4.0K | ||
| 13.10-wgbs-hapa-comp..> | 2026-10-10 16:52 | 4.1K | ||
| 11-simple_annotation.sh | 2026-10-08 21:13 | 4.4K | ||
| 14.1-meth-compare-or..> | 2026-10-10 16:52 | 4.8K | ||
| 13.9-wgbs-bs-snp-che..> | 2026-10-10 16:52 | 5.1K | ||
| 11-annotate_unmatche..> | 2026-10-08 21:13 | 5.2K | ||
| 13.2-wgbs-trim-align.sh | 2026-10-10 16:52 | 5.4K | ||
| 13.7-wgbs-snps.sh | 2026-10-10 16:52 | 5.8K | ||
| 09-align-v1-clean.Rmd | 2026-10-08 21:13 | 6.1K | ||
| 04.5-align-v1-tr.Rmd | 2026-10-08 21:13 | 7.0K | ||
| compiled_metrics.csv | 2025-08-06 12:39 | 7.0K | ||
| 13.7-wgbs-bs-snp-che..> | 2026-10-09 20:19 | 7.9K | ||
| 07-lncRNA-discovery.Rmd | 2026-10-08 21:13 | 8.6K | ||
| 02-RNAseq.Rmd | 2026-10-08 21:13 | 10K | ||
| 13.8-wgbs-dmr-go.Rmd | 2026-10-10 16:52 | 10K | ||
| 13.9-wgbs-bs-snp-che..> | 2026-10-10 16:52 | 11K | ||
| 08-align-v1-contrain..> | 2026-10-08 21:13 | 15K | ||
| 13.10-wgbs-hapa-comp..> | 2026-10-10 16:52 | 15K | ||
| 04-align-v1.Rmd | 2026-10-08 21:13 | 16K | ||
| 15-GN020540-locus.Rmd | 2026-10-10 16:52 | 17K | ||
| 13.4-wgbs-methylatio..> | 2026-10-10 16:52 | 19K | ||
| 14.2-meth-compare.Rmd | 2026-10-10 16:52 | 20K | ||
| 12-compare-genomes.py | 2026-10-08 21:13 | 23K | ||
| 13.6-wgbs-methylatio..> | 2026-10-10 16:52 | 39K | ||
| deg_boxplots.pdf | 2025-08-04 19:57 | 44K | ||
| individual_DEG_boxpl..> | 2025-08-04 20:11 | 75K | ||
| 04-align-v1.html | 2026-10-08 21:13 | 620K | ||