[2026-07-04 22:21:59] Reads ready: 4.5G 4.5G [2026-07-04 22:21:59] Bisulfite index missing/incomplete - (re)building from scratch ... Path to genome folder specified as: /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/22-genome-prep/ Aligner to be used: >> Bowtie 2 << (default) Writing bisulfite genomes out into a single MFA (multi FastA) file Bismark Genome Preparation - Step I: Preparing folders Path to Bowtie 2 specified as: /home/shared/bowtie2-2.4.4-linux-x86_64/ Bisulfite Genome Indexer version v0.24.0 (last modified: 19 May 2022) Created Bisulfite Genome folder /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/22-genome-prep/Bisulfite_Genome/ Created Bisulfite Genome folder /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/22-genome-prep/Bisulfite_Genome/CT_conversion/ Created Bisulfite Genome folder /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/22-genome-prep/Bisulfite_Genome/GA_conversion/ Step I - Prepare genome folders - completed Bismark Genome Preparation - Step II: Bisulfite converting reference genome conversions performed: chromosome C->T G->A NC_086373.1 18248099 18262095 NC_086374.1 16673213 16676290 NC_086375.1 15147906 15168688 NC_086376.1 15474408 15550641 NC_086377.1 14339971 14343319 NC_086378.1 14729881 14746356 NC_086379.1 13723105 13729372 NC_086380.1 13023054 13060489 NC_086381.1 13310473 13221842 NC_086382.1 12685201 12654338 NC_086383.1 11606402 11566508 NC_086384.1 9740076 9753035 NC_086385.1 10220889 10253230 NC_086386.1 13248912 13233647 NW_026963290.1 1308572 1310528 NW_026963291.1 5793 6117 NW_026963292.1 890469 899342 NW_026963293.1 81350 81054 NW_026963294.1 968735 973363 NW_026963295.1 984190 981306 NW_026963296.1 593879 586658 NW_026963297.1 574593 604144 NW_026963298.1 490792 488921 NW_026963299.1 39591 40690 NW_026963300.1 59528 59305 NW_026963301.1 700250 694805 NW_026963302.1 652049 651102 NW_026963303.1 39770 39086 NW_026963304.1 772139 768143 NW_026963305.1 200939 204324 NW_026963306.1 20606 19468 NW_026963307.1 20153 20191 NW_026963308.1 70617 72569 NW_026963309.1 115605 118352 NW_026963310.1 584828 588254 NW_026963311.1 232345 229929 NW_026963312.1 167337 165341 NW_026963313.1 135802 133985 NW_026963314.1 452820 452425 NW_026963315.1 653987 654816 NW_026963316.1 73536 72405 NW_026963317.1 714470 715586 NW_026963318.1 553790 554589 NW_026963319.1 40942 41483 NW_026963320.1 30420 30251 NW_026963321.1 119385 118367 NW_026963322.1 149914 152914 NW_026963323.1 151715 180971 NW_026963324.1 38328 61516 NW_026963325.1 4180 4044 NW_026963326.1 8389 7889 NW_026963327.1 5966 6513 NW_026963328.1 7405 4603 NW_026963329.1 43545 66835 NW_026963330.1 8997 5024 NW_026963331.1 9053 16461 NW_026963332.1 200388 204627 NW_026963333.1 40969 39747 NW_026963334.1 3969 3976 NW_026963335.1 91132 93242 NW_026963336.1 4630 3771 NW_026963337.1 109725 110021 NW_026963338.1 58507 58438 NW_026963339.1 47442 44308 NW_026963340.1 690758 680022 NW_026963341.1 19589 19742 NW_026963342.1 15021 14291 NW_026963343.1 90189 90453 NW_026963344.1 36602 32681 NW_026963345.1 44124 37099 NW_026963346.1 108047 112255 NW_026963347.1 197726 197096 NW_026963348.1 5158 3225 NW_026963349.1 5356 8824 NW_026963350.1 231638 237473 NW_026963351.1 2704 2666 NW_026963352.1 57956 53223 NW_026963353.1 3039 4870 NW_026963354.1 64254 62976 NW_026963355.1 6785 6406 NW_026963356.1 7022 6955 NW_026963357.1 125366 102854 NW_026963358.1 5285 5276 NW_026963359.1 3362 5406 NW_026963360.1 5669 5873 NW_026963361.1 3304 3510 NW_026963362.1 5606 4536 NW_026963363.1 70638 69075 NW_026963364.1 16233 7074 NW_026963365.1 11762 9685 NW_026963366.1 5375 6204 NW_026963367.1 6717 11896 NW_026963368.1 12587 12175 NW_026963369.1 23185 19074 NW_026963370.1 141656 136019 NW_026963371.1 54747 54710 NW_026963372.1 80880 80977 NW_026963373.1 5147 9343 NW_026963374.1 16114 10202 NW_026963375.1 8733 9024 NW_026963376.1 11435 7082 NW_026963377.1 2412 2936 NW_026963378.1 109045 99409 NW_026963379.1 4766 4743 NW_026963380.1 3457 3427 NW_026963381.1 3762 4108 NW_026963382.1 9636 9216 NW_026963383.1 5665 5658 NW_026963384.1 4135 2773 NW_026963385.1 4539 8147 NW_026963386.1 5908 3361 NW_026963387.1 11548 11200 NW_026963388.1 7129 3944 NW_026963389.1 5041 4990 NW_026963390.1 6728 6919 NW_026963391.1 5950 3428 NW_026963392.1 4183 4192 NW_026963393.1 4598 2842 NW_026963394.1 6521 4059 NW_026963395.1 10091 5540 NW_026963396.1 9018 13006 NW_026963397.1 4821 3032 NW_026963398.1 4735 5689 NW_026963399.1 8470 8897 NW_026963400.1 11355 11398 NW_026963401.1 3247 3217 NW_026963402.1 12670 19728 NW_026963403.1 4367 9872 NW_026963404.1 5462 5937 NW_026963405.1 4936 2695 NW_026963406.1 7173 828 NW_026963407.1 4009 3989 NW_026963408.1 8539 8868 NW_026963409.1 5577 5045 NW_026963410.1 7307 7017 NW_026963411.1 5206 5349 NW_026963412.1 4133 3984 NW_026963413.1 7589 4727 NW_026963414.1 6749 6044 NW_026963415.1 4416 5682 NW_026963416.1 6788 6837 NW_026963417.1 7850 13937 NW_026963418.1 13878 14498 NW_026963419.1 23553 13583 NW_026963420.1 4710 4704 NW_026963421.1 4030 3786 NW_026963422.1 2689 4304 NW_026963423.1 7499 4456 NW_026963424.1 16217 15219 NW_026963425.1 4198 6674 NW_026963426.1 4048 3846 NW_026963427.1 8306 8174 NW_026963428.1 4537 4655 NW_026963429.1 3884 2484 NW_026963430.1 4528 2630 NW_026963431.1 3721 4093 NW_026963432.1 4591 2913 NW_026963433.1 22236 13660 NW_026963434.1 4061 4150 NW_026963435.1 6387 3902 NW_026963436.1 9376 9738 NW_026963437.1 3183 5496 NW_026963438.1 4513 4147 NW_026963439.1 6804 5074 NW_026963440.1 5138 5052 NW_026963441.1 4481 2851 NW_026963442.1 5537 5480 NW_026963443.1 9429 8714 NW_026963444.1 3476 3498 NW_026963445.1 15157 14607 NW_026963446.1 2991 4860 NW_026963447.1 6905 6313 NW_026963448.1 5985 6031 NW_026963449.1 7808 9148 NW_026963450.1 4618 4618 NW_026963451.1 11605 12178 NW_026963452.1 3827 6116 NW_026963453.1 12615 12624 NW_026963454.1 5660 3531 NW_026963455.1 5786 5571 NW_026963456.1 3308 5819 NW_026963457.1 3470 4239 NW_026963458.1 3162 3217 NW_026963459.1 8064 4452 NW_026963460.1 4483 4237 NW_026963461.1 10644 10690 NW_026963462.1 4446 4181 NW_026963463.1 3084 3102 NW_026963464.1 4737 2974 NW_026963465.1 3161 2668 NW_026963466.1 5800 6394 NW_026963467.1 3956 4295 NW_026963468.1 4104 4156 NW_026963469.1 3180 5062 NW_026963470.1 8266 8642 NW_026963471.1 12387 19719 NW_026963472.1 9634 8893 NW_026963473.1 9918 6172 NW_026963474.1 3691 5886 NW_026963475.1 8752 7682 NW_026963476.1 3973 3671 NW_026963477.1 4208 2632 NW_026963478.1 3094 4962 NW_026963479.1 4142 4128 NW_026963480.1 5950 6046 NW_026963481.1 3286 4813 NW_026963482.1 3353 3355 NW_026963483.1 4652 2892 NW_026963484.1 8312 7127 NW_026963485.1 3277 2029 NW_026963486.1 3051 1793 NW_026963487.1 4411 4336 NW_026963488.1 5165 3215 NW_026963489.1 5183 5286 NW_026963490.1 4029 4109 NW_026963491.1 6157 5240 NW_026963492.1 7362 7080 NW_026963493.1 7880 7682 NW_026963494.1 5974 6216 NW_026963495.1 5434 6081 NW_026963496.1 5228 4420 NW_026963497.1 3583 3592 NW_026963498.1 4929 4698 NW_026963499.1 5774 5415 NW_026963500.1 14187 8940 NW_026963501.1 2894 4617 NW_026963502.1 5191 5054 NW_026963503.1 5714 5324 NW_026963504.1 3675 3524 NW_026963505.1 6673 7271 NW_026963506.1 7550 4863 NW_026963507.1 8472 8805 NW_026963508.1 4873 7787 NW_026963509.1 2755 2601 NW_026963510.1 3134 4984 NW_026963511.1 3963 2526 NW_026963512.1 4228 4136 NW_026963513.1 3112 3244 NW_026963514.1 6314 6385 NW_026963515.1 4116 2587 NW_026963516.1 4578 2650 NW_026963517.1 1247 1301 NW_026963518.1 5451 5586 NW_026963519.1 8864 8347 NW_026963520.1 5695 5839 NW_026963521.1 5017 3166 NW_026963522.1 5364 4925 NW_026963523.1 3052 1947 NW_026963524.1 11235 6149 NW_026963525.1 5572 2985 NW_026963526.1 4263 2654 NW_026963527.1 4054 4035 NW_026963528.1 3233 3182 NW_026963529.1 4752 2963 NW_026963530.1 7670 6240 NW_026963531.1 5269 2881 NW_026963532.1 5159 3201 NW_026963533.1 6775 6591 NW_026963534.1 5399 2938 NW_026963535.1 3258 3083 NW_026963536.1 2889 4653 NW_026963537.1 6780 6838 NW_026963538.1 5837 5601 NW_026963539.1 3402 2137 NW_026963540.1 5698 4803 NW_026963541.1 6825 7233 NW_026963542.1 3402 5834 NW_026963543.1 3545 4200 NW_026963544.1 5188 4444 NW_026963545.1 4713 2974 NW_026963546.1 4916 4887 NW_026963547.1 2464 2940 NW_026963548.1 7833 7347 NW_026963549.1 7567 7950 NW_026963550.1 7902 7250 NW_026963551.1 4838 5088 NW_026963552.1 7171 7226 NW_026963553.1 10476 10861 NW_026963554.1 6227 6376 NW_026963555.1 4495 4876 NW_026963556.1 6561 7173 NW_026963557.1 3468 3087 NW_026963558.1 8240 8110 NW_026963559.1 5618 5556 NW_026963560.1 5033 5188 NW_026963561.1 3991 3822 NW_026963562.1 4588 4561 NW_026963563.1 2992 2871 NW_026963564.1 4865 5254 NW_026963565.1 2887 2864 NW_026963566.1 5193 3211 NW_026963567.1 5569 8858 NW_026963568.1 7375 7766 NW_026963569.1 6391 3512 NW_026963570.1 6942 7160 NW_026963571.1 5193 6171 NW_026963572.1 5078 3162 NW_026963573.1 5508 5572 NW_026963574.1 2932 3026 NW_026963575.1 8707 8891 NW_026963576.1 9075 9011 NW_026963577.1 3174 3533 NW_026963578.1 3835 4334 NW_026963579.1 7348 11909 NW_026963580.1 4024 6449 NW_026963581.1 6047 6760 NW_026963582.1 18543 15691 NW_026963583.1 10571 11432 NW_026963584.1 10381 4600 NW_026963585.1 7558 7335 NW_026963586.1 6642 4099 NW_026963587.1 3595 5701 NW_026963588.1 6282 10340 NW_026963589.1 3991 4084 NW_026963590.1 3543 3539 NW_026963591.1 3677 3719 NW_026963592.1 2827 4517 NW_026963593.1 4697 4409 NW_026963594.1 3663 4140 NW_026963595.1 6185 6222 NW_026963596.1 5174 5056 NW_026963597.1 848 1274 NW_026963598.1 4321 7069 NW_026963599.1 5633 7858 NW_026963600.1 3581 3763 NW_026963601.1 9481 9583 NW_026963602.1 2732 4373 NW_026963603.1 5457 5450 NW_026963604.1 6025 3718 NW_026963605.1 6013 3788 NW_026963606.1 2679 4307 NW_026963607.1 2962 2974 NW_026963608.1 2877 4557 NW_026963609.1 3259 5415 NW_026963610.1 3353 3392 NW_026963611.1 3030 3220 NW_026963612.1 5657 3523 NW_026963613.1 2898 3008 NW_026963614.1 4596 4746 NW_026963615.1 5269 5092 NW_026963616.1 5384 8629 NW_026963617.1 6881 4297 NW_026963618.1 4042 3968 NW_026963619.1 3446 5493 NW_026963620.1 5439 5984 NW_026963621.1 5788 5584 NW_026963622.1 3678 5905 NW_026963623.1 4744 4874 NW_026963624.1 3463 3436 NW_026963625.1 5549 5066 NW_026963626.1 6208 6667 NW_026963627.1 3893 4067 NW_026963628.1 3672 3656 NW_026963629.1 6948 6396 NW_026963630.1 4746 2972 NW_026963631.1 7212 6797 NW_026963632.1 3927 3313 NW_026963633.1 5653 5240 NW_026963634.1 5622 5553 NW_026963635.1 3831 2412 NW_026963636.1 4858 5136 NW_026963637.1 3902 3965 NW_026963638.1 5437 5982 NW_026963639.1 6412 6453 NW_026963640.1 3563 5682 NW_026963641.1 4105 4123 NW_026963642.1 5512 6411 NW_026963643.1 9513 3013 NW_026963644.1 4814 5169 NW_026963645.1 4214 4164 NW_026963646.1 5609 5858 NW_026963647.1 2564 2793 NW_026963648.1 4232 5018 NW_026963649.1 5893 5063 NW_026963650.1 5526 5475 NW_026963651.1 2601 7372 NW_026963652.1 3024 4841 NW_026963653.1 3634 3770 NW_026963654.1 6041 3721 NW_026963655.1 5855 5567 NW_026963656.1 5031 5431 NW_026963657.1 3547 3723 NW_026963658.1 4642 4435 NW_026963659.1 3433 3434 NW_026963660.1 9253 7807 NW_026963661.1 5139 5265 NW_026963662.1 6060 5977 NW_026963663.1 5846 5745 NW_026963664.1 5063 3219 NW_026963665.1 3541 3798 NW_026963666.1 3545 3345 NW_026963667.1 7511 7403 NW_026963668.1 5120 5309 NW_026963669.1 15552 15998 NW_026963670.1 5532 2955 NW_026963671.1 6655 6703 NW_026963672.1 6167 3902 NW_026963673.1 3856 6146 NW_026963674.1 3832 4193 NW_026963675.1 5387 5236 NW_026963676.1 3372 4014 NW_026963677.1 5863 3313 NW_026963678.1 6064 3807 NW_026963679.1 3682 3622 NW_026963680.1 5477 3405 NW_026963681.1 3473 3714 NW_026963682.1 4586 4146 NW_026963683.1 5381 3251 NW_026963684.1 2400 2339 NW_026963685.1 5007 4735 NW_026963686.1 3293 5885 NW_026963687.1 4860 4450 NW_026963688.1 4571 4209 NW_026963689.1 6684 6648 NW_026963690.1 5323 5501 NW_026963691.1 5910 3172 NW_026963692.1 4200 4259 NW_026963693.1 5795 5881 NW_026963694.1 3430 3396 NW_026963695.1 5434 5123 NW_026963696.1 13890 13890 NW_026963697.1 5823 6428 NW_026963698.1 3574 3474 NW_026963699.1 3267 3232 NW_026963700.1 7843 4857 NW_026963701.1 10854 11041 NW_026963702.1 3745 6040 NW_026963703.1 6287 3963 NW_026963704.1 5830 5686 NW_026963705.1 5314 6307 NW_026963706.1 7107 6775 NW_026963707.1 5742 5704 NW_026963708.1 4708 4342 NW_026963709.1 6697 6454 NW_026963710.1 4694 3030 NW_026963711.1 6470 6024 NW_026963712.1 3705 3861 NW_026963713.1 3934 3983 NW_026963714.1 5503 5380 NW_026963715.1 5105 3024 NW_026963716.1 5170 8638 NW_026963717.1 6516 5997 NW_026963718.1 3129 3433 NW_026963719.1 7462 7745 NW_026963720.1 4928 3047 NW_026963721.1 5558 5556 NW_026963722.1 5704 5841 NW_026963723.1 4532 4315 NW_026963724.1 4199 3538 NW_026963725.1 7835 7391 NW_026963726.1 6479 3772 NW_026963727.1 3328 5303 NW_026963728.1 6236 3910 NW_026963729.1 5261 1639 NW_026963730.1 7121 7280 NW_026963731.1 3077 4893 NW_026963732.1 4421 2790 NW_026963733.1 5993 5656 NW_026963734.1 5023 3155 NW_026963735.1 5629 5656 NW_026963736.1 3862 6227 NW_026963737.1 2286 3638 NW_026963738.1 6611 6075 NW_026963739.1 5303 5157 NW_026963740.1 4204 2588 NW_026963741.1 4958 3081 NW_026963742.1 5142 4908 NW_026963743.1 5761 5770 NW_026963744.1 3367 3599 NW_026963745.1 5516 5360 NW_026963746.1 7113 6802 NW_026963747.1 3163 5036 NW_026963748.1 3995 3818 NW_026963749.1 3146 3443 NW_026963750.1 3653 4332 NW_026963751.1 7442 3247 NW_026963752.1 3062 4982 NW_026963753.1 6948 6815 NW_026963754.1 6078 6113 NW_026963755.1 6305 6338 NW_026963756.1 3876 3682 NW_026963757.1 4808 7714 NW_026963758.1 5565 3446 NW_026963759.1 6311 6568 NW_026963760.1 3399 3730 NW_026963761.1 4149 5947 NW_026963762.1 2535 2676 NW_026963763.1 4052 1423 NW_026963764.1 7607 7516 NW_026963765.1 6284 3899 NW_026963766.1 5583 5802 NW_026963767.1 2093 1933 NW_026963768.1 3628 3702 NW_026963769.1 4556 2818 NW_026963770.1 2540 4099 NW_026963771.1 6688 6320 NW_026963772.1 5983 5766 NW_026963773.1 2819 2906 NW_026963774.1 2740 4411 NW_026963775.1 5274 3292 NW_026963776.1 3986 2472 NW_026963777.1 4886 4869 NW_026963778.1 6538 6237 NW_026963779.1 4980 4406 NW_026963780.1 4940 5656 NW_026963781.1 7249 7745 NW_026963782.1 3588 3275 NW_026963783.1 3795 3980 NW_026963784.1 6505 6660 NW_026963785.1 3729 3367 NW_026963786.1 2773 2764 NW_026963787.1 3199 2974 NW_026963788.1 4466 4564 NW_026963789.1 6990 6954 NW_026963790.1 2503 2453 NW_026963791.1 4780 2940 NW_026963792.1 4446 2770 NW_026963793.1 4155 4579 NW_026963794.1 3155 1923 NW_026963795.1 3374 3231 NW_026963796.1 3739 3528 NW_026963797.1 5376 5596 NW_026963798.1 2041 2056 NW_026963799.1 3135 3027 NW_026963800.1 5766 6251 NW_026963801.1 8487 8847 NW_026963802.1 5666 3528 NW_026963803.1 4729 4269 NW_026963804.1 6255 6554 NW_026963805.1 4851 4576 NW_026963806.1 2149 2147 NW_026963807.1 2006 3570 NW_026963808.1 6617 6167 NW_026963809.1 3029 4832 NW_026963810.1 1762 1905 NW_026963811.1 7053 7103 NW_026963812.1 3691 3779 NW_026963813.1 1637 1760 NW_026963814.1 1408 1438 NW_026963815.1 3356 3420 NC_007687.1 2762 4408 Total number of conversions performed: C->T: 210201209 G->A: 210207269 Step II - Genome bisulfite conversions - completed Bismark Genome Preparation - Step III: Launching the Bowtie 2 indexer Please be aware that this process can - depending on genome size - take several hours! Preparing indexing of CT converted genome in /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/22-genome-prep/Bisulfite_Genome/CT_conversion/ Parent process: Starting to index C->T converted genome with the following command: /home/shared/bowtie2-2.4.4-linux-x86_64/bowtie2-build --threads 1 -f genome_mfa.CT_conversion.fa BS_CT Settings: Output files: "BS_CT.*.bt2" Line rate: 6 (line is 64 bytes) Lines per side: 1 (side is 64 bytes) Offset rate: 4 (one in 16) FTable chars: 10 Strings: unpacked Max bucket size: default Max bucket size, sqrt multiplier: default Max bucket size, len divisor: 4 Difference-cover sample period: 1024 Endianness: little Actual local endianness: little Sanity checking: disabled Assertions: disabled Random seed: 0 Sizeofs: void*:8, int:4, long:8, size_t:8 Input files DNA, FASTA: genome_mfa.CT_conversion.fa Building a SMALL index Reading reference sizes Preparing indexing of GA converted genome in /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/22-genome-prep/Bisulfite_Genome/GA_conversion/ Child process: Starting to index G->A converted genome with the following command: /home/shared/bowtie2-2.4.4-linux-x86_64/bowtie2-build --threads 1 -f genome_mfa.GA_conversion.fa BS_GA Settings: Output files: "BS_GA.*.bt2" Line rate: 6 (line is 64 bytes) Lines per side: 1 (side is 64 bytes) Offset rate: 4 (one in 16) FTable chars: 10 Strings: unpacked Max bucket size: default Max bucket size, sqrt multiplier: default Max bucket size, len divisor: 4 Difference-cover sample period: 1024 Endianness: little Actual local endianness: little Sanity checking: disabled Assertions: disabled Random seed: 0 Sizeofs: void*:8, int:4, long:8, size_t:8 Input files DNA, FASTA: genome_mfa.GA_conversion.fa Building a SMALL index Reading reference sizes Time reading reference sizes: 00:00:19 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time reading reference sizes: 00:00:20 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time to join reference sequences: 00:00:13 bmax according to bmaxDivN setting: 324621089 Using parameters --bmax 243465817 --dcv 1024 Doing ahead-of-time memory usage test Time to join reference sequences: 00:00:12 bmax according to bmaxDivN setting: 324621089 Using parameters --bmax 243465817 --dcv 1024 Doing ahead-of-time memory usage test Passed! Constructing with these parameters: --bmax 243465817 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples Passed! Constructing with these parameters: --bmax 243465817 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples V-Sorting samples time: 00:01:29 Allocating rank array Ranking v-sort output V-Sorting samples time: 00:01:30 Allocating rank array Ranking v-sort output Ranking v-sort output time: 00:00:19 Invoking Larsson-Sadakane on ranks Ranking v-sort output time: 00:00:23 Invoking Larsson-Sadakane on ranks Invoking Larsson-Sadakane on ranks time: 00:00:20 Sanity-checking and returning Building samples Reserving space for 12 sample suffixes Generating random suffixes QSorting 12 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 12 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes Invoking Larsson-Sadakane on ranks time: 00:00:27 Sanity-checking and returning Building samples Reserving space for 12 sample suffixes Generating random suffixes QSorting 12 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 12 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 7; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 6; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 1; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 1; iterating... Splitting and merging Splitting and merging time: 00:00:00 Avg bucket size: 1.85498e+08 (target: 243465816) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 7 Reserving size (243465817) for bucket 1 Calculating Z arrays for bucket 1 Entering block accumulator loop for bucket 1: bucket 1: 10% bucket 1: 20% bucket 1: 30% bucket 1: 40% bucket 1: 50% bucket 1: 60% bucket 1: 70% bucket 1: 80% bucket 1: 90% bucket 1: 100% Sorting block of length 236624321 for bucket 1 (Using difference cover) Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 1; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 1; iterating... Splitting and merging Splitting and merging time: 00:00:00 Avg bucket size: 1.62311e+08 (target: 243465816) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 8 Reserving size (243465817) for bucket 1 Calculating Z arrays for bucket 1 Entering block accumulator loop for bucket 1: bucket 1: 10% bucket 1: 20% bucket 1: 30% bucket 1: 40% bucket 1: 50% bucket 1: 60% bucket 1: 70% bucket 1: 80% bucket 1: 90% bucket 1: 100% Sorting block of length 221131680 for bucket 1 (Using difference cover) Sorting block time: 00:05:54 Returning block of 236624322 for bucket 1 Getting block 2 of 7 Reserving size (243465817) for bucket 2 Calculating Z arrays for bucket 2 Entering block accumulator loop for bucket 2: bucket 2: 10% bucket 2: 20% bucket 2: 30% bucket 2: 40% bucket 2: 50% bucket 2: 60% bucket 2: 70% bucket 2: 80% bucket 2: 90% bucket 2: 100% Sorting block of length 166669629 for bucket 2 (Using difference cover) Sorting block time: 00:05:06 Returning block of 221131681 for bucket 1 Getting block 2 of 8 Reserving size (243465817) for bucket 2 Calculating Z arrays for bucket 2 Entering block accumulator loop for bucket 2: bucket 2: 10% bucket 2: 20% bucket 2: 30% bucket 2: 40% bucket 2: 50% bucket 2: 60% bucket 2: 70% bucket 2: 80% bucket 2: 90% bucket 2: 100% Sorting block of length 126093393 for bucket 2 (Using difference cover) Sorting block time: 00:02:37 Returning block of 126093394 for bucket 2 Sorting block time: 00:04:28 Returning block of 166669630 for bucket 2 Getting block 3 of 8 Reserving size (243465817) for bucket 3 Calculating Z arrays for bucket 3 Entering block accumulator loop for bucket 3: bucket 3: 10% bucket 3: 20% bucket 3: 30% bucket 3: 40% bucket 3: 50% bucket 3: 60% Getting block 3 of 7 Reserving size (243465817) for bucket 3 Calculating Z arrays for bucket 3 Entering block accumulator loop for bucket 3: bucket 3: 70% bucket 3: 10% bucket 3: 80% bucket 3: 90% bucket 3: 20% bucket 3: 100% Sorting block of length 171255996 for bucket 3 (Using difference cover) bucket 3: 30% bucket 3: 40% bucket 3: 50% bucket 3: 60% bucket 3: 70% bucket 3: 80% bucket 3: 90% bucket 3: 100% Sorting block of length 236014114 for bucket 3 (Using difference cover) Sorting block time: 00:03:53 Returning block of 171255997 for bucket 3 Getting block 4 of 8 Reserving size (243465817) for bucket 4 Calculating Z arrays for bucket 4 Entering block accumulator loop for bucket 4: bucket 4: 10% bucket 4: 20% bucket 4: 30% bucket 4: 40% bucket 4: 50% bucket 4: 60% bucket 4: 70% bucket 4: 80% bucket 4: 90% bucket 4: 100% Sorting block of length 186227732 for bucket 4 (Using difference cover) Sorting block time: 00:06:52 Returning block of 236014115 for bucket 3 Getting block 4 of 7 Reserving size (243465817) for bucket 4 Calculating Z arrays for bucket 4 Entering block accumulator loop for bucket 4: bucket 4: 10% bucket 4: 20% bucket 4: 30% bucket 4: 40% bucket 4: 50% bucket 4: 60% bucket 4: 70% bucket 4: 80% bucket 4: 90% bucket 4: 100% Sorting block of length 45550881 for bucket 4 (Using difference cover) Sorting block time: 00:04:34 Returning block of 186227733 for bucket 4 Sorting block time: 00:01:03 Returning block of 45550882 for bucket 4 Getting block 5 of 7 Reserving size (243465817) for bucket 5 Calculating Z arrays for bucket 5 Entering block accumulator loop for bucket 5: bucket 5: 10% bucket 5: 20% bucket 5: 30% bucket 5: 40% Getting block 5 of 8 Reserving size (243465817) for bucket 5 Calculating Z arrays for bucket 5 Entering block accumulator loop for bucket 5: bucket 5: 50% bucket 5: 10% bucket 5: 60% bucket 5: 20% bucket 5: 70% bucket 5: 30% bucket 5: 80% bucket 5: 40% bucket 5: 90% bucket 5: 50% bucket 5: 100% Sorting block of length 222478976 for bucket 5 (Using difference cover) bucket 5: 60% bucket 5: 70% bucket 5: 80% bucket 5: 90% bucket 5: 100% Sorting block of length 191555603 for bucket 5 (Using difference cover) Sorting block time: 00:04:19 Returning block of 191555604 for bucket 5 Getting block 6 of 8 Reserving size (243465817) for bucket 6 Calculating Z arrays for bucket 6 Entering block accumulator loop for bucket 6: bucket 6: 10% bucket 6: 20% bucket 6: 30% bucket 6: 40% bucket 6: 50% Sorting block time: 00:05:47 Returning block of 222478977 for bucket 5 bucket 6: 60% bucket 6: 70% bucket 6: 80% bucket 6: 90% bucket 6: 100% Sorting block of length 106431143 for bucket 6 (Using difference cover) Getting block 6 of 7 Reserving size (243465817) for bucket 6 Calculating Z arrays for bucket 6 Entering block accumulator loop for bucket 6: bucket 6: 10% bucket 6: 20% bucket 6: 30% bucket 6: 40% bucket 6: 50% bucket 6: 60% bucket 6: 70% bucket 6: 80% bucket 6: 90% bucket 6: 100% Sorting block of length 232686465 for bucket 6 (Using difference cover) Sorting block time: 00:02:31 Returning block of 106431144 for bucket 6 Getting block 7 of 8 Reserving size (243465817) for bucket 7 Calculating Z arrays for bucket 7 Entering block accumulator loop for bucket 7: bucket 7: 10% bucket 7: 20% bucket 7: 30% bucket 7: 40% bucket 7: 50% bucket 7: 60% bucket 7: 70% bucket 7: 80% bucket 7: 90% bucket 7: 100% Sorting block of length 163561456 for bucket 7 (Using difference cover) Sorting block time: 00:03:56 Returning block of 163561457 for bucket 7 Sorting block time: 00:06:29 Returning block of 232686466 for bucket 6 Getting block 8 of 8 Reserving size (243465817) for bucket 8 Calculating Z arrays for bucket 8 Entering block accumulator loop for bucket 8: bucket 8: 10% bucket 8: 20% bucket 8: 30% bucket 8: 40% bucket 8: 50% bucket 8: 60% bucket 8: 70% bucket 8: 80% Getting block 7 of 7 Reserving size (243465817) for bucket 7 Calculating Z arrays for bucket 7 Entering block accumulator loop for bucket 7: bucket 8: 90% bucket 7: 10% bucket 8: 100% Sorting block of length 132227349 for bucket 8 (Using difference cover) bucket 7: 20% bucket 7: 30% bucket 7: 40% bucket 7: 50% bucket 7: 60% bucket 7: 70% bucket 7: 80% bucket 7: 90% bucket 7: 100% Sorting block of length 158459967 for bucket 7 (Using difference cover) Sorting block time: 00:03:11 Returning block of 132227350 for bucket 8 Exited Ebwt loop fchr[A]: 0 fchr[C]: 649359874 fchr[G]: 859561083 fchr[T]: 859561083 fchr[$]: 1298484359 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 437056448 bytes to primary EBWT file: BS_GA.1.bt2 Wrote 324621096 bytes to secondary EBWT file: BS_GA.2.bt2 Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 1298484359 bwtLen: 1298484360 sz: 324621090 bwtSz: 324621090 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 81155273 offsSz: 324621092 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 6762940 numLines: 6762940 ebwtTotLen: 432828160 ebwtTotSz: 432828160 color: 0 reverse: 0 Total time for call to driver() for forward index: 00:49:38 Reading reference sizes Time reading reference sizes: 00:00:15 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time to join reference sequences: 00:00:12 Time to reverse reference sequence: 00:00:01 bmax according to bmaxDivN setting: 324621089 Using parameters --bmax 243465817 --dcv 1024 Doing ahead-of-time memory usage test Passed! Constructing with these parameters: --bmax 243465817 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples Sorting block time: 00:04:29 Returning block of 158459968 for bucket 7 Exited Ebwt loop fchr[A]: 0 fchr[C]: 439152605 fchr[G]: 439152605 fchr[T]: 649359874 fchr[$]: 1298484359 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 437056448 bytes to primary EBWT file: BS_CT.1.bt2 Wrote 324621096 bytes to secondary EBWT file: BS_CT.2.bt2 Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 1298484359 bwtLen: 1298484360 sz: 324621090 bwtSz: 324621090 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 81155273 offsSz: 324621092 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 6762940 numLines: 6762940 ebwtTotLen: 432828160 ebwtTotSz: 432828160 color: 0 reverse: 0 Total time for call to driver() for forward index: 00:51:32 Reading reference sizes V-Sorting samples time: 00:01:23 Allocating rank array Ranking v-sort output Time reading reference sizes: 00:00:14 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Ranking v-sort output time: 00:00:19 Invoking Larsson-Sadakane on ranks Time to join reference sequences: 00:00:13 Time to reverse reference sequence: 00:00:02 bmax according to bmaxDivN setting: 324621089 Using parameters --bmax 243465817 --dcv 1024 Doing ahead-of-time memory usage test Passed! Constructing with these parameters: --bmax 243465817 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples Invoking Larsson-Sadakane on ranks time: 00:00:28 Sanity-checking and returning Building samples Reserving space for 12 sample suffixes Generating random suffixes QSorting 12 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 12 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes V-Sorting samples time: 00:01:28 Allocating rank array Ranking v-sort output Splitting and merging Splitting and merging time: 00:00:00 Split 2, merged 6; iterating... Ranking v-sort output time: 00:00:22 Invoking Larsson-Sadakane on ranks Invoking Larsson-Sadakane on ranks time: 00:00:27 Sanity-checking and returning Building samples Reserving space for 12 sample suffixes Generating random suffixes QSorting 12 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 12 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes Splitting and merging Splitting and merging time: 00:00:00 Avg bucket size: 1.44276e+08 (target: 243465816) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 9 Reserving size (243465817) for bucket 1 Calculating Z arrays for bucket 1 Entering block accumulator loop for bucket 1: bucket 1: 10% bucket 1: 20% bucket 1: 30% bucket 1: 40% bucket 1: 50% bucket 1: 60% bucket 1: 70% bucket 1: 80% bucket 1: 90% bucket 1: 100% Sorting block of length 115680416 for bucket 1 (Using difference cover) Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 7; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 0; iterating... Splitting and merging Splitting and merging time: 00:00:00 Avg bucket size: 1.62311e+08 (target: 243465816) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 8 Reserving size (243465817) for bucket 1 Calculating Z arrays for bucket 1 Entering block accumulator loop for bucket 1: bucket 1: 10% bucket 1: 20% bucket 1: 30% bucket 1: 40% bucket 1: 50% bucket 1: 60% bucket 1: 70% bucket 1: 80% bucket 1: 90% bucket 1: 100% Sorting block of length 185000349 for bucket 1 (Using difference cover) Sorting block time: 00:02:46 Returning block of 115680417 for bucket 1 Getting block 2 of 9 Reserving size (243465817) for bucket 2 Calculating Z arrays for bucket 2 Entering block accumulator loop for bucket 2: bucket 2: 10% bucket 2: 20% bucket 2: 30% bucket 2: 40% bucket 2: 50% bucket 2: 60% bucket 2: 70% bucket 2: 80% bucket 2: 90% bucket 2: 100% Sorting block of length 137730391 for bucket 2 (Using difference cover) Sorting block time: 00:04:39 Returning block of 185000350 for bucket 1 Sorting block time: 00:03:21 Returning block of 137730392 for bucket 2 Getting block 3 of 9 Reserving size (243465817) for bucket 3 Calculating Z arrays for bucket 3 Entering block accumulator loop for bucket 3: bucket 3: 10% Getting block 2 of 8 Reserving size (243465817) for bucket 2 Calculating Z arrays for bucket 2 Entering block accumulator loop for bucket 2: bucket 3: 20% bucket 2: 10% bucket 3: 30% bucket 3: 40% bucket 2: 20% bucket 3: 50% bucket 2: 30% bucket 3: 60% bucket 2: 40% bucket 3: 70% bucket 2: 50% bucket 2: 60% bucket 3: 80% bucket 2: 70% bucket 3: 90% bucket 2: 80% bucket 2: 90% bucket 3: 100% Sorting block of length 134344875 for bucket 3 (Using difference cover) bucket 2: 100% Sorting block of length 80909855 for bucket 2 (Using difference cover) Sorting block time: 00:02:01 Returning block of 80909856 for bucket 2 Getting block 3 of 8 Reserving size (243465817) for bucket 3 Calculating Z arrays for bucket 3 Entering block accumulator loop for bucket 3: bucket 3: 10% bucket 3: 20% bucket 3: 30% bucket 3: 40% bucket 3: 50% bucket 3: 60% bucket 3: 70% bucket 3: 80% bucket 3: 90% bucket 3: 100% Sorting block of length 173242398 for bucket 3 (Using difference cover) Sorting block time: 00:03:12 Returning block of 134344876 for bucket 3 Getting block 4 of 9 Reserving size (243465817) for bucket 4 Calculating Z arrays for bucket 4 Entering block accumulator loop for bucket 4: bucket 4: 10% bucket 4: 20% bucket 4: 30% bucket 4: 40% bucket 4: 50% bucket 4: 60% bucket 4: 70% bucket 4: 80% bucket 4: 90% bucket 4: 100% Sorting block of length 186252856 for bucket 4 (Using difference cover) Sorting block time: 00:04:32 Returning block of 173242399 for bucket 3 Getting block 4 of 8 Reserving size (243465817) for bucket 4 Calculating Z arrays for bucket 4 Entering block accumulator loop for bucket 4: bucket 4: 10% bucket 4: 20% bucket 4: 30% bucket 4: 40% bucket 4: 50% bucket 4: 60% bucket 4: 70% bucket 4: 80% bucket 4: 90% Sorting block time: 00:04:16 Returning block of 186252857 for bucket 4 bucket 4: 100% Sorting block of length 132677472 for bucket 4 (Using difference cover) Getting block 5 of 9 Reserving size (243465817) for bucket 5 Calculating Z arrays for bucket 5 Entering block accumulator loop for bucket 5: bucket 5: 10% bucket 5: 20% bucket 5: 30% bucket 5: 40% bucket 5: 50% bucket 5: 60% bucket 5: 70% bucket 5: 80% bucket 5: 90% bucket 5: 100% Sorting block of length 80313974 for bucket 5 (Using difference cover) Sorting block time: 00:03:13 Returning block of 132677473 for bucket 4 Sorting block time: 00:02:00 Returning block of 80313975 for bucket 5 Getting block 5 of 8 Reserving size (243465817) for bucket 5 Calculating Z arrays for bucket 5 Entering block accumulator loop for bucket 5: bucket 5: 10% bucket 5: 20% Getting block 6 of 9 Reserving size (243465817) for bucket 6 Calculating Z arrays for bucket 6 Entering block accumulator loop for bucket 6: bucket 5: 30% bucket 5: 40% bucket 6: 10% bucket 5: 50% bucket 6: 20% bucket 5: 60% bucket 6: 30% bucket 5: 70% bucket 6: 40% bucket 5: 80% bucket 6: 50% bucket 5: 90% bucket 6: 60% bucket 5: 100% Sorting block of length 161012141 for bucket 5 (Using difference cover) bucket 6: 70% bucket 6: 80% bucket 6: 90% bucket 6: 100% Sorting block of length 242273559 for bucket 6 (Using difference cover) Sorting block time: 00:04:41 Returning block of 161012142 for bucket 5 Getting block 6 of 8 Reserving size (243465817) for bucket 6 Calculating Z arrays for bucket 6 Entering block accumulator loop for bucket 6: bucket 6: 10% bucket 6: 20% bucket 6: 30% bucket 6: 40% bucket 6: 50% Sorting block time: 00:05:30 Returning block of 242273560 for bucket 6 bucket 6: 60% bucket 6: 70% bucket 6: 80% bucket 6: 90% bucket 6: 100% Sorting block of length 165477899 for bucket 6 (Using difference cover) Getting block 7 of 9 Reserving size (243465817) for bucket 7 Calculating Z arrays for bucket 7 Entering block accumulator loop for bucket 7: bucket 7: 10% bucket 7: 20% bucket 7: 30% bucket 7: 40% bucket 7: 50% bucket 7: 60% bucket 7: 70% bucket 7: 80% bucket 7: 90% bucket 7: 100% Sorting block of length 154575082 for bucket 7 (Using difference cover) Sorting block time: 00:04:19 Returning block of 165477900 for bucket 6 Sorting block time: 00:03:47 Returning block of 154575083 for bucket 7 Getting block 7 of 8 Reserving size (243465817) for bucket 7 Calculating Z arrays for bucket 7 Entering block accumulator loop for bucket 7: bucket 7: 10% bucket 7: 20% bucket 7: 30% bucket 7: 40% bucket 7: 50% bucket 7: 60% bucket 7: 70% bucket 7: 80% bucket 7: 90% bucket 7: 100% Sorting block of length 225238421 for bucket 7 (Using difference cover) Getting block 8 of 9 Reserving size (243465817) for bucket 8 Calculating Z arrays for bucket 8 Entering block accumulator loop for bucket 8: bucket 8: 10% bucket 8: 20% bucket 8: 30% bucket 8: 40% bucket 8: 50% bucket 8: 60% bucket 8: 70% bucket 8: 80% bucket 8: 90% bucket 8: 100% Sorting block of length 181906404 for bucket 8 (Using difference cover) Sorting block time: 00:04:06 Returning block of 181906405 for bucket 8 Getting block 9 of 9 Reserving size (243465817) for bucket 9 Calculating Z arrays for bucket 9 Entering block accumulator loop for bucket 9: bucket 9: 10% bucket 9: 20% bucket 9: 30% Sorting block time: 00:06:00 Returning block of 225238422 for bucket 7 bucket 9: 40% bucket 9: 50% bucket 9: 60% bucket 9: 70% bucket 9: 80% bucket 9: 90% bucket 9: 100% Sorting block of length 65406794 for bucket 9 (Using difference cover) Getting block 8 of 8 Reserving size (243465817) for bucket 8 Calculating Z arrays for bucket 8 Entering block accumulator loop for bucket 8: bucket 8: 10% bucket 8: 20% bucket 8: 30% bucket 8: 40% bucket 8: 50% bucket 8: 60% bucket 8: 70% bucket 8: 80% bucket 8: 90% bucket 8: 100% Sorting block of length 174925817 for bucket 8 (Using difference cover) Sorting block time: 00:01:12 Returning block of 65406795 for bucket 9 Exited Ebwt loop fchr[A]: 0 fchr[C]: 649359874 fchr[G]: 859561083 fchr[T]: 859561083 fchr[$]: 1298484359 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 437056448 bytes to primary EBWT file: BS_GA.rev.1.bt2 Wrote 324621096 bytes to secondary EBWT file: BS_GA.rev.2.bt2 Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 1298484359 bwtLen: 1298484360 sz: 324621090 bwtSz: 324621090 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 81155273 offsSz: 324621092 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 6762940 numLines: 6762940 ebwtTotLen: 432828160 ebwtTotSz: 432828160 color: 0 reverse: 1 Total time for backward call to driver() for mirror index: 00:46:42 Sorting block time: 00:04:47 Returning block of 174925818 for bucket 8 Exited Ebwt loop fchr[A]: 0 fchr[C]: 439152605 fchr[G]: 439152605 fchr[T]: 649359874 fchr[$]: 1298484359 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 437056448 bytes to primary EBWT file: BS_CT.rev.1.bt2 Wrote 324621096 bytes to secondary EBWT file: BS_CT.rev.2.bt2 Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 1298484359 bwtLen: 1298484360 sz: 324621090 bwtSz: 324621090 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 81155273 offsSz: 324621092 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 6762940 numLines: 6762940 ebwtTotLen: 432828160 ebwtTotSz: 432828160 color: 0 reverse: 1 Total time for backward call to driver() for mirror index: 00:49:49 ========================================= Parallel genome indexing complete. Enjoy! [2026-07-05 00:04:31] Aligning 93M with Bismark/Bowtie2 ... [2026-07-05 06:18:25] Reads ready: 4.5G 4.5G [2026-07-05 06:18:25] Complete Bisulfite_Genome present - skipping prep. [2026-07-05 06:18:25] Aligning 93M with Bismark/Bowtie2 ... [2026-07-06 05:31:41] Deduplicating 93M ... Output will be written into the directory: /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/ Processing paired-end Bismark output file(s) (SAM format): /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/23-bismark-align/93M_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>/home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/23-bismark-align/93M_pe.bam<< for signs of file truncation... Now testing Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/23-bismark-align/93M_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: 93M_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:NC_086373.1 LN:113486924 skipping header line: @SQ SN:NC_086374.1 LN:103707636 skipping header line: @SQ SN:NC_086375.1 LN:94312406 skipping header line: @SQ SN:NC_086376.1 LN:96324366 skipping header line: @SQ SN:NC_086377.1 LN:88129055 skipping header line: @SQ SN:NC_086378.1 LN:91445414 skipping header line: @SQ SN:NC_086379.1 LN:85406108 skipping header line: @SQ SN:NC_086380.1 LN:80675551 skipping header line: @SQ SN:NC_086381.1 LN:82295107 skipping header line: @SQ SN:NC_086382.1 LN:78455819 skipping header line: @SQ SN:NC_086383.1 LN:71253669 skipping header line: @SQ SN:NC_086384.1 LN:60198110 skipping header line: @SQ SN:NC_086385.1 LN:63222996 skipping header line: @SQ SN:NC_086386.1 LN:81773519 skipping header line: @SQ SN:NW_026963290.1 LN:8139973 skipping header line: @SQ SN:NW_026963291.1 LN:22515 skipping header line: @SQ SN:NW_026963292.1 LN:5553665 skipping header line: @SQ SN:NW_026963293.1 LN:500000 skipping header line: @SQ SN:NW_026963294.1 LN:5965364 skipping header line: @SQ SN:NW_026963295.1 LN:6074899 skipping header line: @SQ SN:NW_026963296.1 LN:3628579 skipping header line: @SQ SN:NW_026963297.1 LN:3444836 skipping header line: @SQ SN:NW_026963298.1 LN:2989614 skipping header line: @SQ SN:NW_026963299.1 LN:250000 skipping header line: @SQ SN:NW_026963300.1 LN:356632 skipping header line: @SQ SN:NW_026963301.1 LN:4334515 skipping header line: @SQ SN:NW_026963302.1 LN:4076163 skipping header line: @SQ SN:NW_026963303.1 LN:250000 skipping header line: @SQ SN:NW_026963304.1 LN:4603332 skipping header line: @SQ SN:NW_026963305.1 LN:1250000 skipping header line: @SQ SN:NW_026963306.1 LN:121029 skipping header line: @SQ SN:NW_026963307.1 LN:125000 skipping header line: @SQ SN:NW_026963308.1 LN:418548 skipping header line: @SQ SN:NW_026963309.1 LN:710015 skipping header line: @SQ SN:NW_026963310.1 LN:3670610 skipping header line: @SQ SN:NW_026963311.1 LN:1420456 skipping header line: @SQ SN:NW_026963312.1 LN:1013396 skipping header line: @SQ SN:NW_026963313.1 LN:825963 skipping header line: @SQ SN:NW_026963314.1 LN:2737876 skipping header line: @SQ SN:NW_026963315.1 LN:4066460 skipping header line: @SQ SN:NW_026963316.1 LN:450949 skipping header line: @SQ SN:NW_026963317.1 LN:4467411 skipping header line: @SQ SN:NW_026963318.1 LN:3454087 skipping header line: @SQ SN:NW_026963319.1 LN:250000 skipping header line: @SQ SN:NW_026963320.1 LN:175774 skipping header line: @SQ SN:NW_026963321.1 LN:741490 skipping header line: @SQ SN:NW_026963322.1 LN:899002 skipping header line: @SQ SN:NW_026963323.1 LN:961498 skipping header line: @SQ SN:NW_026963324.1 LN:293216 skipping header line: @SQ SN:NW_026963325.1 LN:26743 skipping header line: @SQ SN:NW_026963326.1 LN:30845 skipping header line: @SQ SN:NW_026963327.1 LN:35643 skipping header line: @SQ SN:NW_026963328.1 LN:31473 skipping header line: @SQ SN:NW_026963329.1 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line: @SQ SN:NW_026963348.1 LN:21803 skipping header line: @SQ SN:NW_026963349.1 LN:40271 skipping header line: @SQ SN:NW_026963350.1 LN:1415666 skipping header line: @SQ SN:NW_026963351.1 LN:17622 skipping header line: @SQ SN:NW_026963352.1 LN:337009 skipping header line: @SQ SN:NW_026963353.1 LN:20381 skipping header line: @SQ SN:NW_026963354.1 LN:394918 skipping header line: @SQ SN:NW_026963355.1 LN:24539 skipping header line: @SQ SN:NW_026963356.1 LN:34117 skipping header line: @SQ SN:NW_026963357.1 LN:666514 skipping header line: @SQ SN:NW_026963358.1 LN:27938 skipping header line: @SQ SN:NW_026963359.1 LN:23142 skipping header line: @SQ SN:NW_026963360.1 LN:21876 skipping header line: @SQ SN:NW_026963361.1 LN:21893 skipping header line: @SQ SN:NW_026963362.1 LN:29136 skipping header line: @SQ SN:NW_026963363.1 LN:419011 skipping header line: @SQ SN:NW_026963364.1 LN:60149 skipping header line: @SQ SN:NW_026963365.1 LN:61440 skipping header line: @SQ SN:NW_026963366.1 LN:26902 skipping header line: @SQ SN:NW_026963367.1 LN:51097 skipping header line: @SQ SN:NW_026963368.1 LN:77113 skipping header line: @SQ SN:NW_026963369.1 LN:121069 skipping header line: @SQ SN:NW_026963370.1 LN:866335 skipping header line: @SQ SN:NW_026963371.1 LN:332943 skipping header line: @SQ SN:NW_026963372.1 LN:501245 skipping header line: @SQ SN:NW_026963373.1 LN:41944 skipping header line: @SQ SN:NW_026963374.1 LN:73985 skipping header line: @SQ SN:NW_026963375.1 LN:53741 skipping header line: @SQ SN:NW_026963376.1 LN:53927 skipping header line: @SQ SN:NW_026963377.1 LN:15328 skipping header line: @SQ SN:NW_026963378.1 LN:612846 skipping header line: @SQ SN:NW_026963379.1 LN:30276 skipping header line: @SQ SN:NW_026963380.1 LN:20427 skipping header line: @SQ SN:NW_026963381.1 LN:25540 skipping header line: @SQ SN:NW_026963382.1 LN:58265 skipping header line: @SQ SN:NW_026963383.1 LN:25711 skipping header line: @SQ SN:NW_026963384.1 LN:18896 skipping header line: @SQ 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line: @SQ SN:NW_026963404.1 LN:32390 skipping header line: @SQ SN:NW_026963405.1 LN:20760 skipping header line: @SQ SN:NW_026963406.1 LN:17091 skipping header line: @SQ SN:NW_026963407.1 LN:25441 skipping header line: @SQ SN:NW_026963408.1 LN:32110 skipping header line: @SQ SN:NW_026963409.1 LN:25245 skipping header line: @SQ SN:NW_026963410.1 LN:26685 skipping header line: @SQ SN:NW_026963411.1 LN:26243 skipping header line: @SQ SN:NW_026963412.1 LN:23891 skipping header line: @SQ SN:NW_026963413.1 LN:32257 skipping header line: @SQ SN:NW_026963414.1 LN:35770 skipping header line: @SQ SN:NW_026963415.1 LN:28815 skipping header line: @SQ SN:NW_026963416.1 LN:33904 skipping header line: @SQ SN:NW_026963417.1 LN:59749 skipping header line: @SQ SN:NW_026963418.1 LN:81418 skipping header line: @SQ SN:NW_026963419.1 LN:107657 skipping header line: @SQ SN:NW_026963420.1 LN:30761 skipping header line: @SQ SN:NW_026963421.1 LN:23947 skipping header line: @SQ SN:NW_026963422.1 LN:18164 skipping header line: @SQ SN:NW_026963423.1 LN:25693 skipping header line: @SQ SN:NW_026963424.1 LN:91214 skipping header line: @SQ SN:NW_026963425.1 LN:28588 skipping header line: @SQ SN:NW_026963426.1 LN:22706 skipping header line: @SQ SN:NW_026963427.1 LN:31282 skipping header line: @SQ SN:NW_026963428.1 LN:29918 skipping header line: @SQ SN:NW_026963429.1 LN:18537 skipping header line: @SQ SN:NW_026963430.1 LN:19656 skipping header line: @SQ SN:NW_026963431.1 LN:24459 skipping header line: @SQ SN:NW_026963432.1 LN:22327 skipping header line: @SQ SN:NW_026963433.1 LN:105369 skipping header line: @SQ SN:NW_026963434.1 LN:26908 skipping header line: @SQ SN:NW_026963435.1 LN:28497 skipping header line: @SQ SN:NW_026963436.1 LN:36282 skipping header line: @SQ SN:NW_026963437.1 LN:23739 skipping header line: @SQ SN:NW_026963438.1 LN:24630 skipping header line: @SQ SN:NW_026963439.1 LN:34452 skipping header line: @SQ SN:NW_026963440.1 LN:33196 skipping header line: @SQ SN:NW_026963441.1 LN:21370 skipping header line: @SQ SN:NW_026963442.1 LN:20837 skipping header line: @SQ SN:NW_026963443.1 LN:56464 skipping header line: @SQ SN:NW_026963444.1 LN:22596 skipping header line: @SQ SN:NW_026963445.1 LN:89992 skipping header line: @SQ SN:NW_026963446.1 LN:20471 skipping header line: @SQ SN:NW_026963447.1 LN:25005 skipping header line: @SQ SN:NW_026963448.1 LN:22800 skipping header line: @SQ SN:NW_026963449.1 LN:48946 skipping header line: @SQ SN:NW_026963450.1 LN:23621 skipping header line: @SQ SN:NW_026963451.1 LN:69983 skipping header line: @SQ SN:NW_026963452.1 LN:26246 skipping header line: @SQ SN:NW_026963453.1 LN:73232 skipping header line: @SQ SN:NW_026963454.1 LN:23625 skipping header line: @SQ SN:NW_026963455.1 LN:21431 skipping header line: @SQ SN:NW_026963456.1 LN:20408 skipping header line: @SQ SN:NW_026963457.1 LN:23150 skipping header line: @SQ SN:NW_026963458.1 LN:20814 skipping header line: @SQ SN:NW_026963459.1 LN:33799 skipping header line: @SQ SN:NW_026963460.1 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line: @SQ SN:NW_026963498.1 LN:27759 skipping header line: @SQ SN:NW_026963499.1 LN:31922 skipping header line: @SQ SN:NW_026963500.1 LN:55274 skipping header line: @SQ SN:NW_026963501.1 LN:19548 skipping header line: @SQ SN:NW_026963502.1 LN:19545 skipping header line: @SQ SN:NW_026963503.1 LN:31769 skipping header line: @SQ SN:NW_026963504.1 LN:20921 skipping header line: @SQ SN:NW_026963505.1 LN:26440 skipping header line: @SQ SN:NW_026963506.1 LN:36130 skipping header line: @SQ SN:NW_026963507.1 LN:50233 skipping header line: @SQ SN:NW_026963508.1 LN:37121 skipping header line: @SQ SN:NW_026963509.1 LN:15802 skipping header line: @SQ SN:NW_026963510.1 LN:21446 skipping header line: @SQ SN:NW_026963511.1 LN:16917 skipping header line: @SQ SN:NW_026963512.1 LN:24391 skipping header line: @SQ SN:NW_026963513.1 LN:19462 skipping header line: @SQ SN:NW_026963514.1 LN:24066 skipping header line: @SQ SN:NW_026963515.1 LN:17459 skipping header line: @SQ SN:NW_026963516.1 LN:18652 skipping header line: @SQ SN:NW_026963517.1 LN:8618 skipping header line: @SQ SN:NW_026963518.1 LN:20873 skipping header line: @SQ SN:NW_026963519.1 LN:32632 skipping header line: @SQ SN:NW_026963520.1 LN:36645 skipping header line: @SQ SN:NW_026963521.1 LN:23952 skipping header line: @SQ SN:NW_026963522.1 LN:22556 skipping header line: @SQ SN:NW_026963523.1 LN:15718 skipping header line: @SQ SN:NW_026963524.1 LN:50340 skipping header line: @SQ SN:NW_026963525.1 LN:23212 skipping header line: @SQ SN:NW_026963526.1 LN:18080 skipping header line: @SQ SN:NW_026963527.1 LN:24976 skipping header line: @SQ SN:NW_026963528.1 LN:20932 skipping header line: @SQ SN:NW_026963529.1 LN:20070 skipping header line: @SQ SN:NW_026963530.1 LN:43040 skipping header line: @SQ SN:NW_026963531.1 LN:22373 skipping header line: @SQ SN:NW_026963532.1 LN:21610 skipping header line: @SQ SN:NW_026963533.1 LN:25225 skipping header line: @SQ SN:NW_026963534.1 LN:22597 skipping header line: @SQ SN:NW_026963535.1 LN:18239 skipping header line: @SQ SN:NW_026963536.1 LN:19511 skipping header line: @SQ SN:NW_026963537.1 LN:25744 skipping header line: @SQ SN:NW_026963538.1 LN:33248 skipping header line: @SQ SN:NW_026963539.1 LN:16194 skipping header line: @SQ SN:NW_026963540.1 LN:29982 skipping header line: @SQ SN:NW_026963541.1 LN:38121 skipping header line: @SQ SN:NW_026963542.1 LN:23886 skipping header line: @SQ SN:NW_026963543.1 LN:22120 skipping header line: @SQ SN:NW_026963544.1 LN:40706 skipping header line: @SQ SN:NW_026963545.1 LN:22511 skipping header line: @SQ SN:NW_026963546.1 LN:29792 skipping header line: @SQ SN:NW_026963547.1 LN:15422 skipping header line: @SQ SN:NW_026963548.1 LN:28602 skipping header line: @SQ SN:NW_026963549.1 LN:29363 skipping header line: @SQ SN:NW_026963550.1 LN:42899 skipping header line: @SQ SN:NW_026963551.1 LN:28569 skipping header line: @SQ SN:NW_026963552.1 LN:47249 skipping header line: @SQ SN:NW_026963553.1 LN:40295 skipping header line: @SQ SN:NW_026963554.1 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line: @SQ SN:NW_026963592.1 LN:19131 skipping header line: @SQ SN:NW_026963593.1 LN:17046 skipping header line: @SQ SN:NW_026963594.1 LN:23204 skipping header line: @SQ SN:NW_026963595.1 LN:23624 skipping header line: @SQ SN:NW_026963596.1 LN:19410 skipping header line: @SQ SN:NW_026963597.1 LN:4560 skipping header line: @SQ SN:NW_026963598.1 LN:29441 skipping header line: @SQ SN:NW_026963599.1 LN:40152 skipping header line: @SQ SN:NW_026963600.1 LN:21122 skipping header line: @SQ SN:NW_026963601.1 LN:36140 skipping header line: @SQ SN:NW_026963602.1 LN:18515 skipping header line: @SQ SN:NW_026963603.1 LN:20142 skipping header line: @SQ SN:NW_026963604.1 LN:25383 skipping header line: @SQ SN:NW_026963605.1 LN:28494 skipping header line: @SQ SN:NW_026963606.1 LN:18177 skipping header line: @SQ SN:NW_026963607.1 LN:18627 skipping header line: @SQ SN:NW_026963608.1 LN:22139 skipping header line: @SQ SN:NW_026963609.1 LN:25457 skipping header line: @SQ SN:NW_026963610.1 LN:20696 skipping header line: @SQ SN:NW_026963611.1 LN:20121 skipping header line: @SQ SN:NW_026963612.1 LN:23855 skipping header line: @SQ SN:NW_026963613.1 LN:19683 skipping header line: @SQ SN:NW_026963614.1 LN:17735 skipping header line: @SQ SN:NW_026963615.1 LN:24639 skipping header line: @SQ SN:NW_026963616.1 LN:36520 skipping header line: @SQ SN:NW_026963617.1 LN:29370 skipping header line: @SQ SN:NW_026963618.1 LN:25732 skipping header line: @SQ SN:NW_026963619.1 LN:23735 skipping header line: @SQ SN:NW_026963620.1 LN:21397 skipping header line: @SQ SN:NW_026963621.1 LN:21572 skipping header line: @SQ SN:NW_026963622.1 LN:25321 skipping header line: @SQ SN:NW_026963623.1 LN:18363 skipping header line: @SQ SN:NW_026963624.1 LN:20416 skipping header line: @SQ SN:NW_026963625.1 LN:20064 skipping header line: @SQ SN:NW_026963626.1 LN:37124 skipping header line: @SQ SN:NW_026963627.1 LN:23433 skipping header line: @SQ SN:NW_026963628.1 LN:24267 skipping header line: @SQ SN:NW_026963629.1 LN:25181 skipping header line: @SQ SN:NW_026963630.1 LN:20211 skipping header line: @SQ SN:NW_026963631.1 LN:26376 skipping header line: @SQ SN:NW_026963632.1 LN:20626 skipping header line: @SQ SN:NW_026963633.1 LN:32619 skipping header line: @SQ SN:NW_026963634.1 LN:21163 skipping header line: @SQ SN:NW_026963635.1 LN:18606 skipping header line: @SQ SN:NW_026963636.1 LN:18842 skipping header line: @SQ SN:NW_026963637.1 LN:25787 skipping header line: @SQ SN:NW_026963638.1 LN:21305 skipping header line: @SQ SN:NW_026963639.1 LN:24239 skipping header line: @SQ SN:NW_026963640.1 LN:24465 skipping header line: @SQ SN:NW_026963641.1 LN:26936 skipping header line: @SQ SN:NW_026963642.1 LN:22173 skipping header line: @SQ SN:NW_026963643.1 LN:33930 skipping header line: @SQ SN:NW_026963644.1 LN:30601 skipping header line: @SQ SN:NW_026963645.1 LN:27131 skipping header line: @SQ SN:NW_026963646.1 LN:21725 skipping header line: @SQ SN:NW_026963647.1 LN:17559 skipping header line: @SQ SN:NW_026963648.1 LN:26423 skipping header line: @SQ SN:NW_026963649.1 LN:23991 skipping header line: @SQ SN:NW_026963650.1 LN:21075 skipping header line: @SQ SN:NW_026963651.1 LN:37035 skipping header line: @SQ SN:NW_026963652.1 LN:20328 skipping header line: @SQ SN:NW_026963653.1 LN:17920 skipping header line: @SQ SN:NW_026963654.1 LN:25257 skipping header line: @SQ SN:NW_026963655.1 LN:21611 skipping header line: @SQ SN:NW_026963656.1 LN:31880 skipping header line: @SQ SN:NW_026963657.1 LN:17971 skipping header line: @SQ SN:NW_026963658.1 LN:17181 skipping header line: @SQ SN:NW_026963659.1 LN:21841 skipping header line: @SQ SN:NW_026963660.1 LN:48676 skipping header line: @SQ SN:NW_026963661.1 LN:19775 skipping header line: @SQ SN:NW_026963662.1 LN:35568 skipping header line: @SQ SN:NW_026963663.1 LN:21947 skipping header line: @SQ SN:NW_026963664.1 LN:24250 skipping header line: @SQ SN:NW_026963665.1 LN:21491 skipping header line: @SQ SN:NW_026963666.1 LN:22260 skipping header line: @SQ SN:NW_026963667.1 LN:28403 skipping header line: @SQ SN:NW_026963668.1 LN:19543 skipping header line: @SQ SN:NW_026963669.1 LN:59060 skipping header line: @SQ SN:NW_026963670.1 LN:23088 skipping header line: @SQ SN:NW_026963671.1 LN:25210 skipping header line: @SQ SN:NW_026963672.1 LN:29503 skipping header line: @SQ SN:NW_026963673.1 LN:26257 skipping header line: @SQ SN:NW_026963674.1 LN:22982 skipping header line: @SQ SN:NW_026963675.1 LN:20127 skipping header line: @SQ SN:NW_026963676.1 LN:21567 skipping header line: @SQ SN:NW_026963677.1 LN:25240 skipping header line: @SQ SN:NW_026963678.1 LN:25959 skipping header line: @SQ SN:NW_026963679.1 LN:23464 skipping header line: @SQ SN:NW_026963680.1 LN:23133 skipping header line: @SQ SN:NW_026963681.1 LN:22873 skipping header line: @SQ SN:NW_026963682.1 LN:27482 skipping header line: @SQ SN:NW_026963683.1 LN:23835 skipping header line: @SQ SN:NW_026963684.1 LN:18595 skipping header line: @SQ SN:NW_026963685.1 LN:25677 skipping header line: @SQ SN:NW_026963686.1 LN:25352 skipping header line: @SQ SN:NW_026963687.1 LN:26654 skipping header line: @SQ SN:NW_026963688.1 LN:16682 skipping header line: @SQ SN:NW_026963689.1 LN:43634 skipping header line: @SQ SN:NW_026963690.1 LN:20473 skipping header line: @SQ SN:NW_026963691.1 LN:24782 skipping header line: @SQ SN:NW_026963692.1 LN:27429 skipping header line: @SQ SN:NW_026963693.1 LN:22023 skipping header line: @SQ SN:NW_026963694.1 LN:22432 skipping header line: @SQ SN:NW_026963695.1 LN:27801 skipping header line: @SQ SN:NW_026963696.1 LN:89040 skipping header line: @SQ SN:NW_026963697.1 LN:29127 skipping header line: @SQ SN:NW_026963698.1 LN:22758 skipping header line: @SQ SN:NW_026963699.1 LN:21265 skipping header line: @SQ SN:NW_026963700.1 LN:32610 skipping header line: @SQ SN:NW_026963701.1 LN:40879 skipping header line: @SQ SN:NW_026963702.1 LN:25242 skipping header line: @SQ SN:NW_026963703.1 LN:27008 skipping header line: @SQ SN:NW_026963704.1 LN:21375 skipping header line: @SQ SN:NW_026963705.1 LN:33180 skipping header line: @SQ SN:NW_026963706.1 LN:26193 skipping header line: @SQ SN:NW_026963707.1 LN:21669 skipping header line: @SQ SN:NW_026963708.1 LN:25618 skipping header line: @SQ SN:NW_026963709.1 LN:25056 skipping header line: @SQ SN:NW_026963710.1 LN:22608 skipping header line: @SQ SN:NW_026963711.1 LN:23115 skipping header line: @SQ SN:NW_026963712.1 LN:22043 skipping header line: @SQ SN:NW_026963713.1 LN:25891 skipping header line: @SQ SN:NW_026963714.1 LN:24871 skipping header line: @SQ SN:NW_026963715.1 LN:22811 skipping header line: @SQ SN:NW_026963716.1 LN:38945 skipping header line: @SQ SN:NW_026963717.1 LN:35514 skipping header line: @SQ SN:NW_026963718.1 LN:21356 skipping header line: @SQ SN:NW_026963719.1 LN:28341 skipping header line: @SQ SN:NW_026963720.1 LN:20602 skipping header line: @SQ SN:NW_026963721.1 LN:20995 skipping header line: @SQ SN:NW_026963722.1 LN:21623 skipping header line: @SQ SN:NW_026963723.1 LN:22869 skipping header line: @SQ SN:NW_026963724.1 LN:22118 skipping header line: @SQ SN:NW_026963725.1 LN:27787 skipping header line: @SQ SN:NW_026963726.1 LN:28118 skipping header line: @SQ SN:NW_026963727.1 LN:22374 skipping header line: @SQ SN:NW_026963728.1 LN:26688 skipping header line: @SQ SN:NW_026963729.1 LN:18680 skipping header line: @SQ SN:NW_026963730.1 LN:26877 skipping header line: @SQ SN:NW_026963731.1 LN:22152 skipping header line: @SQ SN:NW_026963732.1 LN:21122 skipping header line: @SQ SN:NW_026963733.1 LN:30669 skipping header line: @SQ SN:NW_026963734.1 LN:21233 skipping header line: @SQ SN:NW_026963735.1 LN:20919 skipping header line: @SQ SN:NW_026963736.1 LN:26026 skipping header Total number of alignments analysed in /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/23-bismark-align/93M_pe.bam: 46820548 Total number duplicated alignments removed: 5872961 (12.54%) Duplicated alignments were found at: 4746892 different position(s) Total count of deduplicated leftover sequences: 40947587 (87.46% of total) line: @SQ SN:NW_026963737.1 LN:15473 skipping header line: @SQ SN:NW_026963738.1 LN:23824 skipping header line: @SQ SN:NW_026963739.1 LN:19804 skipping header line: @SQ SN:NW_026963740.1 LN:17713 skipping header line: @SQ SN:NW_026963741.1 LN:20707 skipping header line: @SQ SN:NW_026963742.1 LN:18963 skipping header line: @SQ SN:NW_026963743.1 LN:21370 skipping header line: @SQ SN:NW_026963744.1 LN:22821 skipping header line: @SQ SN:NW_026963745.1 LN:20669 skipping header line: @SQ SN:NW_026963746.1 LN:25286 skipping header line: @SQ SN:NW_026963747.1 LN:21276 skipping header line: @SQ SN:NW_026963748.1 LN:22489 skipping header line: @SQ SN:NW_026963749.1 LN:18369 skipping header line: @SQ SN:NW_026963750.1 LN:22802 skipping header line: @SQ SN:NW_026963751.1 LN:24575 skipping header line: @SQ SN:NW_026963752.1 LN:23655 skipping header line: @SQ SN:NW_026963753.1 LN:26162 skipping header line: @SQ SN:NW_026963754.1 LN:23060 skipping header line: @SQ SN:NW_026963755.1 LN:23954 skipping header line: @SQ SN:NW_026963756.1 LN:21792 skipping header line: @SQ SN:NW_026963757.1 LN:32711 skipping header line: @SQ SN:NW_026963758.1 LN:26150 skipping header line: @SQ SN:NW_026963759.1 LN:24511 skipping header line: @SQ SN:NW_026963760.1 LN:21863 skipping header line: @SQ SN:NW_026963761.1 LN:29603 skipping header line: @SQ SN:NW_026963762.1 LN:14940 skipping header line: @SQ SN:NW_026963763.1 LN:20415 skipping header line: @SQ SN:NW_026963764.1 LN:28644 skipping header line: @SQ SN:NW_026963765.1 LN:26859 skipping header line: @SQ SN:NW_026963766.1 LN:21572 skipping header line: @SQ SN:NW_026963767.1 LN:11867 skipping header line: @SQ SN:NW_026963768.1 LN:22422 skipping header line: @SQ SN:NW_026963769.1 LN:19132 skipping header line: @SQ SN:NW_026963770.1 LN:17338 skipping header line: @SQ SN:NW_026963771.1 LN:24159 skipping header line: @SQ SN:NW_026963772.1 LN:22295 skipping header line: @SQ SN:NW_026963773.1 LN:15046 skipping header line: @SQ SN:NW_026963774.1 LN:18598 skipping header line: @SQ SN:NW_026963775.1 LN:22167 skipping header line: @SQ SN:NW_026963776.1 LN:16973 skipping header line: @SQ SN:NW_026963777.1 LN:18602 skipping header line: @SQ SN:NW_026963778.1 LN:24241 skipping header line: @SQ SN:NW_026963779.1 LN:27924 skipping header line: @SQ SN:NW_026963780.1 LN:25424 skipping header line: @SQ SN:NW_026963781.1 LN:28413 skipping header line: @SQ SN:NW_026963782.1 LN:20838 skipping header line: @SQ SN:NW_026963783.1 LN:22467 skipping header line: @SQ SN:NW_026963784.1 LN:25012 skipping header line: @SQ SN:NW_026963785.1 LN:13181 skipping header line: @SQ SN:NW_026963786.1 LN:18105 skipping header line: @SQ SN:NW_026963787.1 LN:18769 skipping header line: @SQ SN:NW_026963788.1 LN:21775 skipping header line: @SQ SN:NW_026963789.1 LN:26327 skipping header line: @SQ SN:NW_026963790.1 LN:14514 skipping header line: @SQ SN:NW_026963791.1 LN:20050 skipping header line: @SQ SN:NW_026963792.1 LN:18784 skipping header line: @SQ SN:NW_026963793.1 LN:20749 skipping header line: @SQ SN:NW_026963794.1 LN:13251 skipping header line: @SQ SN:NW_026963795.1 LN:20766 skipping header line: @SQ SN:NW_026963796.1 LN:23492 skipping header line: @SQ SN:NW_026963797.1 LN:20235 skipping header line: @SQ SN:NW_026963798.1 LN:13457 skipping header line: @SQ SN:NW_026963799.1 LN:17957 skipping header line: @SQ SN:NW_026963800.1 LN:22384 skipping header line: @SQ SN:NW_026963801.1 LN:31865 skipping header line: @SQ SN:NW_026963802.1 LN:24022 skipping header line: @SQ SN:NW_026963803.1 LN:26219 skipping header line: @SQ SN:NW_026963804.1 LN:24043 skipping header line: @SQ SN:NW_026963805.1 LN:28961 skipping header line: @SQ SN:NW_026963806.1 LN:14045 skipping header line: @SQ SN:NW_026963807.1 LN:15082 skipping header line: @SQ SN:NW_026963808.1 LN:24314 skipping header line: @SQ SN:NW_026963809.1 LN:20441 skipping header line: @SQ SN:NW_026963810.1 LN:10923 skipping header line: @SQ SN:NW_026963811.1 LN:26407 skipping header line: @SQ SN:NW_026963812.1 LN:14166 skipping header line: @SQ SN:NW_026963813.1 LN:10138 skipping header line: @SQ SN:NW_026963814.1 LN:8703 skipping header line: @SQ SN:NW_026963815.1 LN:16400 skipping header line: @SQ SN:NC_007687.1 LN:18652 skipping header line: @PG ID:Bismark VN:v0.24.0 CL:"bismark --path_to_bowtie2 /home/shared/bowtie2-2.4.4-linux-x86_64 -genome /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/22-genome-prep/ -p 12 -score_min L,0,-0.6 --non_directional -1 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25.1-93M-cov-recovery/reads/93M_R1.fastp-trim.fq.gz -2 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25.1-93M-cov-recovery/reads/93M_R2.fastp-trim.fq.gz -o /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/23-bismark-align --basename 93M" skipping header line: @PG ID:samtools PN:samtools PP:Bismark VN:1.19.2 CL:/usr/bin/samtools view -bSh - skipping header line: @PG ID:samtools.1 PN:samtools PP:samtools VN:1.19.2 CL:/usr/bin/samtools view -h --threads 1 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/23-bismark-align/93M_pe.bam [2026-07-06 05:44:40] Extracting methylation calls ... *** Bismark methylation extractor version v0.24.0 *** Output will be written into the directory: /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/ Trying to determine the type of mapping from the SAM header line of file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Treating file(s) as paired-end data (as extracted from @PG line) Setting option '--no_overlap' since this is (normally) the right thing to do for paired-end data Core usage currently set to more than 20 threads. Let's see how this goes... (set value: 24) Summarising Bismark methylation extractor parameters: =============================================================== Bismark paired-end SAM format specified (default) Number of cores to be used: 24 Strand-specific outputs will be skipped. Separate output files for cytosines in CpG, CHG and CHH context will be generated Merge CHG and CHH context to non-CpG context specified Output path specified as: /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/ Summarising bedGraph parameters: =============================================================== Generating additional output in bedGraph and coverage format bedGraph format: coverage format: Using a cutoff of 1 read(s) to report cytosine positions Reporting and sorting cytosine methylation information in CpG context only (default) The bedGraph UNIX sort command will use the following memory setting: '50%'. Temporary directory used for sorting is the output directory Checking file >>/home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >/home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/CpG_context_93M_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/Non_CpG_context_93M_pe.deduplicated.txt Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Now reading in Bismark result file /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:NC_086373.1 LN:113486924 skipping SAM header line: @SQ SN:NC_086374.1 LN:103707636 skipping SAM header line: @SQ SN:NC_086375.1 LN:94312406 skipping SAM header line: @SQ SN:NC_086376.1 LN:96324366 skipping SAM header line: @SQ SN:NC_086377.1 LN:88129055 skipping SAM header line: @SQ SN:NC_086378.1 LN:91445414 skipping SAM header line: @SQ SN:NC_086379.1 LN:85406108 skipping SAM header line: @SQ SN:NC_086380.1 LN:80675551 skipping SAM header line: @SQ SN:NC_086381.1 LN:82295107 skipping SAM header line: @SQ SN:NC_086382.1 LN:78455819 skipping SAM header line: @SQ SN:NC_086383.1 LN:71253669 skipping SAM header line: @SQ SN:NC_086384.1 LN:60198110 skipping SAM header line: @SQ SN:NC_086385.1 LN:63222996 skipping SAM header line: @SQ SN:NC_086386.1 LN:81773519 skipping SAM header line: @SQ SN:NW_026963290.1 LN:8139973 skipping SAM header line: @SQ SN:NW_026963291.1 LN:22515 skipping SAM header line: @SQ SN:NW_026963292.1 LN:5553665 skipping SAM header line: @SQ SN:NW_026963293.1 LN:500000 skipping SAM header line: @SQ SN:NW_026963294.1 LN:5965364 skipping SAM header line: @SQ SN:NW_026963295.1 LN:6074899 skipping SAM header line: @SQ SN:NW_026963296.1 LN:3628579 skipping SAM header line: @SQ SN:NW_026963297.1 LN:3444836 skipping SAM header line: @SQ SN:NW_026963298.1 LN:2989614 skipping SAM header line: @SQ SN:NW_026963299.1 LN:250000 skipping SAM header line: @SQ SN:NW_026963300.1 LN:356632 skipping SAM header line: @SQ SN:NW_026963301.1 LN:4334515 skipping SAM header line: @SQ SN:NW_026963302.1 LN:4076163 skipping SAM header line: @SQ SN:NW_026963303.1 LN:250000 skipping SAM header line: @SQ SN:NW_026963304.1 LN:4603332 skipping SAM header line: @SQ SN:NW_026963305.1 LN:1250000 skipping SAM header line: @SQ SN:NW_026963306.1 LN:121029 skipping SAM header line: @SQ SN:NW_026963307.1 LN:125000 skipping SAM header line: @SQ SN:NW_026963308.1 LN:418548 skipping SAM header line: @SQ SN:NW_026963309.1 LN:710015 skipping SAM header line: @SQ SN:NW_026963310.1 LN:3670610 skipping SAM header line: @SQ SN:NW_026963311.1 LN:1420456 skipping SAM header line: @SQ SN:NW_026963312.1 LN:1013396 skipping SAM header line: @SQ SN:NW_026963313.1 LN:825963 skipping SAM header line: @SQ SN:NW_026963314.1 LN:2737876 skipping SAM header line: @SQ SN:NW_026963315.1 LN:4066460 skipping SAM header line: @SQ SN:NW_026963316.1 LN:450949 skipping SAM header line: @SQ SN:NW_026963317.1 LN:4467411 skipping SAM header line: @SQ SN:NW_026963318.1 LN:3454087 skipping SAM header line: @SQ SN:NW_026963319.1 LN:250000 skipping SAM header line: @SQ SN:NW_026963320.1 LN:175774 skipping SAM header line: @SQ SN:NW_026963321.1 LN:741490 skipping SAM header line: @SQ SN:NW_026963322.1 LN:899002 skipping SAM header line: @SQ SN:NW_026963323.1 LN:961498 skipping SAM header line: @SQ SN:NW_026963324.1 LN:293216 skipping SAM header line: @SQ SN:NW_026963325.1 LN:26743 skipping SAM header line: @SQ SN:NW_026963326.1 LN:30845 skipping SAM header line: @SQ SN:NW_026963327.1 LN:35643 skipping SAM header line: @SQ SN:NW_026963328.1 LN:31473 skipping SAM header line: @SQ SN:NW_026963329.1 LN:267817 skipping SAM header line: @SQ SN:NW_026963330.1 LN:38397 skipping SAM header line: @SQ SN:NW_026963331.1 LN:73781 skipping SAM header line: @SQ SN:NW_026963332.1 LN:1260917 skipping SAM header line: @SQ SN:NW_026963333.1 LN:250000 skipping SAM header line: @SQ SN:NW_026963334.1 LN:25388 skipping SAM header line: @SQ SN:NW_026963335.1 LN:565390 skipping SAM header line: @SQ SN:NW_026963336.1 LN:26109 skipping SAM header line: @SQ SN:NW_026963337.1 LN:659095 skipping SAM header line: @SQ SN:NW_026963338.1 LN:357655 skipping SAM header line: @SQ SN:NW_026963339.1 LN:277346 skipping SAM header line: @SQ SN:NW_026963340.1 LN:4220937 skipping SAM header line: @SQ SN:NW_026963341.1 LN:122847 skipping SAM header line: @SQ SN:NW_026963342.1 LN:58283 skipping SAM header line: @SQ SN:NW_026963343.1 LN:556242 skipping SAM header line: @SQ SN:NW_026963344.1 LN:203489 skipping SAM header line: @SQ SN:NW_026963345.1 LN:224476 skipping SAM header line: @SQ SN:NW_026963346.1 LN:651063 skipping SAM header line: @SQ SN:NW_026963347.1 LN:1227606 skipping SAM header line: @SQ SN:NW_026963348.1 LN:21803 skipping SAM header line: @SQ SN:NW_026963349.1 LN:40271 skipping SAM header line: @SQ SN:NW_026963350.1 LN:1415666 skipping SAM header line: @SQ SN:NW_026963351.1 LN:17622 skipping SAM header line: @SQ SN:NW_026963352.1 LN:337009 skipping SAM header line: @SQ SN:NW_026963353.1 LN:20381 skipping SAM header line: @SQ SN:NW_026963354.1 LN:394918 skipping SAM header line: @SQ SN:NW_026963355.1 LN:24539 skipping SAM header line: @SQ SN:NW_026963356.1 LN:34117 skipping SAM header line: @SQ SN:NW_026963357.1 LN:666514 skipping SAM header line: @SQ SN:NW_026963358.1 LN:27938 skipping SAM header line: @SQ SN:NW_026963359.1 LN:23142 skipping SAM header line: @SQ SN:NW_026963360.1 LN:21876 skipping SAM header line: @SQ SN:NW_026963361.1 LN:21893 skipping SAM header line: @SQ SN:NW_026963362.1 LN:29136 skipping SAM header line: @SQ SN:NW_026963363.1 LN:419011 skipping SAM header line: @SQ SN:NW_026963364.1 LN:60149 skipping SAM header line: @SQ SN:NW_026963365.1 LN:61440 skipping SAM header line: @SQ SN:NW_026963366.1 LN:26902 skipping SAM header line: @SQ SN:NW_026963367.1 LN:51097 skipping SAM header line: @SQ SN:NW_026963368.1 LN:77113 skipping SAM header line: @SQ SN:NW_026963369.1 LN:121069 skipping SAM header line: @SQ SN:NW_026963370.1 LN:866335 skipping SAM header line: @SQ SN:NW_026963371.1 LN:332943 skipping SAM header line: @SQ SN:NW_026963372.1 LN:501245 skipping SAM header line: @SQ SN:NW_026963373.1 LN:41944 skipping SAM header line: @SQ SN:NW_026963374.1 LN:73985 skipping SAM header line: @SQ SN:NW_026963375.1 LN:53741 skipping SAM header line: @SQ SN:NW_026963376.1 LN:53927 skipping SAM header line: @SQ SN:NW_026963377.1 LN:15328 skipping SAM header line: @SQ SN:NW_026963378.1 LN:612846 skipping SAM header line: @SQ SN:NW_026963379.1 LN:30276 skipping SAM header line: @SQ SN:NW_026963380.1 LN:20427 skipping SAM header line: @SQ SN:NW_026963381.1 LN:25540 skipping SAM header line: @SQ SN:NW_026963382.1 LN:58265 skipping SAM header line: @SQ SN:NW_026963383.1 LN:25711 skipping SAM header line: @SQ SN:NW_026963384.1 LN:18896 skipping SAM header line: @SQ SN:NW_026963385.1 LN:34901 skipping SAM header line: @SQ SN:NW_026963386.1 LN:25234 skipping SAM header line: @SQ SN:NW_026963387.1 LN:66105 skipping SAM header line: @SQ SN:NW_026963388.1 LN:30312 skipping SAM header line: @SQ SN:NW_026963389.1 LN:32428 skipping SAM header line: @SQ SN:NW_026963390.1 LN:25381 skipping SAM header line: @SQ SN:NW_026963391.1 LN:26017 skipping SAM header line: @SQ SN:NW_026963392.1 LN:25685 skipping SAM header line: @SQ SN:NW_026963393.1 LN:19274 skipping SAM header line: @SQ SN:NW_026963394.1 LN:27950 skipping SAM header line: @SQ SN:NW_026963395.1 LN:45255 skipping SAM header line: @SQ SN:NW_026963396.1 LN:63704 skipping SAM header line: @SQ SN:NW_026963397.1 LN:22806 skipping SAM header line: @SQ SN:NW_026963398.1 LN:24645 skipping SAM header line: @SQ SN:NW_026963399.1 LN:50812 skipping SAM header line: @SQ SN:NW_026963400.1 LN:70378 skipping SAM header line: @SQ SN:NW_026963401.1 LN:21165 skipping SAM header line: @SQ SN:NW_026963402.1 LN:95337 skipping SAM header line: @SQ SN:NW_026963403.1 LN:32744 skipping SAM header line: @SQ SN:NW_026963404.1 LN:32390 skipping SAM header line: @SQ SN:NW_026963405.1 LN:20760 skipping SAM header line: @SQ SN:NW_026963406.1 LN:17091 skipping SAM header line: @SQ SN:NW_026963407.1 LN:25441 skipping SAM header line: @SQ SN:NW_026963408.1 LN:32110 skipping SAM header line: @SQ SN:NW_026963409.1 LN:25245 skipping SAM header line: @SQ SN:NW_026963410.1 LN:26685 skipping SAM header line: @SQ SN:NW_026963411.1 LN:26243 skipping SAM header line: @SQ SN:NW_026963412.1 LN:23891 skipping SAM header line: @SQ SN:NW_026963413.1 LN:32257 skipping SAM header line: @SQ SN:NW_026963414.1 LN:35770 skipping SAM header line: @SQ SN:NW_026963415.1 LN:28815 skipping SAM header line: @SQ SN:NW_026963416.1 LN:33904 skipping SAM header line: @SQ SN:NW_026963417.1 LN:59749 skipping SAM header line: @SQ SN:NW_026963418.1 LN:81418 skipping SAM header line: @SQ SN:NW_026963419.1 LN:107657 skipping SAM header line: @SQ SN:NW_026963420.1 LN:30761 skipping SAM header line: @SQ SN:NW_026963421.1 LN:23947 skipping SAM header line: @SQ SN:NW_026963422.1 LN:18164 skipping SAM header line: @SQ SN:NW_026963423.1 LN:25693 skipping SAM header line: @SQ SN:NW_026963424.1 LN:91214 skipping SAM header line: @SQ SN:NW_026963425.1 LN:28588 skipping SAM header line: @SQ SN:NW_026963426.1 LN:22706 skipping SAM header line: @SQ SN:NW_026963427.1 LN:31282 skipping SAM header line: @SQ SN:NW_026963428.1 LN:29918 skipping SAM header line: @SQ SN:NW_026963429.1 LN:18537 skipping SAM header line: @SQ SN:NW_026963430.1 LN:19656 skipping SAM header line: @SQ SN:NW_026963431.1 LN:24459 skipping SAM header line: @SQ SN:NW_026963432.1 LN:22327 skipping SAM header line: @SQ SN:NW_026963433.1 LN:105369 skipping SAM header line: @SQ SN:NW_026963434.1 LN:26908 skipping SAM header line: @SQ SN:NW_026963435.1 LN:28497 skipping SAM header line: @SQ SN:NW_026963436.1 LN:36282 skipping SAM header line: @SQ SN:NW_026963437.1 LN:23739 skipping SAM header line: @SQ SN:NW_026963438.1 LN:24630 skipping SAM header line: @SQ SN:NW_026963439.1 LN:34452 skipping SAM header line: @SQ SN:NW_026963440.1 LN:33196 skipping SAM header line: @SQ SN:NW_026963441.1 LN:21370 skipping SAM header line: @SQ SN:NW_026963442.1 LN:20837 skipping SAM header line: @SQ SN:NW_026963443.1 LN:56464 skipping SAM header line: @SQ SN:NW_026963444.1 LN:22596 skipping SAM header line: @SQ SN:NW_026963445.1 LN:89992 skipping SAM header line: @SQ SN:NW_026963446.1 LN:20471 skipping SAM header line: @SQ SN:NW_026963447.1 LN:25005 skipping SAM header line: @SQ SN:NW_026963448.1 LN:22800 skipping SAM header line: @SQ SN:NW_026963449.1 LN:48946 skipping SAM header line: @SQ SN:NW_026963450.1 LN:23621 skipping SAM header line: @SQ SN:NW_026963451.1 LN:69983 skipping SAM header line: @SQ SN:NW_026963452.1 LN:26246 skipping SAM header line: @SQ SN:NW_026963453.1 LN:73232 skipping SAM header line: @SQ SN:NW_026963454.1 LN:23625 skipping SAM header line: @SQ SN:NW_026963455.1 LN:21431 skipping SAM header line: @SQ SN:NW_026963456.1 LN:20408 skipping SAM header line: @SQ SN:NW_026963457.1 LN:23150 skipping SAM header line: @SQ SN:NW_026963458.1 LN:20814 skipping SAM header line: @SQ SN:NW_026963459.1 LN:33799 skipping SAM header line: @SQ SN:NW_026963460.1 LN:22951 skipping SAM header line: @SQ SN:NW_026963461.1 LN:39207 skipping SAM header line: @SQ SN:NW_026963462.1 LN:16320 skipping SAM header line: @SQ SN:NW_026963463.1 LN:19723 skipping SAM header line: @SQ SN:NW_026963464.1 LN:19884 skipping SAM header line: @SQ SN:NW_026963465.1 LN:17047 skipping SAM header line: @SQ SN:NW_026963466.1 LN:28987 skipping SAM header line: @SQ SN:NW_026963467.1 LN:26703 skipping SAM header line: @SQ SN:NW_026963468.1 LN:27006 skipping SAM header line: @SQ SN:NW_026963469.1 LN:21377 skipping SAM header line: @SQ SN:NW_026963470.1 LN:31960 skipping SAM header line: @SQ SN:NW_026963471.1 LN:89899 skipping SAM header line: @SQ SN:NW_026963472.1 LN:52362 skipping SAM header line: @SQ SN:NW_026963473.1 LN:46928 skipping SAM header line: @SQ SN:NW_026963474.1 LN:24695 skipping SAM header line: @SQ SN:NW_026963475.1 LN:38188 skipping SAM header line: @SQ SN:NW_026963476.1 LN:22631 skipping SAM header line: @SQ SN:NW_026963477.1 LN:17795 skipping SAM header line: @SQ SN:NW_026963478.1 LN:20901 skipping SAM header line: @SQ SN:NW_026963479.1 LN:26325 skipping SAM header line: @SQ SN:NW_026963480.1 LN:22825 skipping SAM header line: @SQ SN:NW_026963481.1 LN:23040 skipping SAM header line: @SQ SN:NW_026963482.1 LN:21352 skipping SAM header line: @SQ SN:NW_026963483.1 LN:19517 skipping SAM header line: @SQ SN:NW_026963484.1 LN:43699 skipping SAM header line: @SQ SN:NW_026963485.1 LN:14016 skipping SAM header line: @SQ SN:NW_026963486.1 LN:13954 skipping SAM header line: @SQ SN:NW_026963487.1 LN:25855 skipping SAM header line: @SQ SN:NW_026963488.1 LN:21550 skipping SAM header line: @SQ SN:NW_026963489.1 LN:33800 skipping SAM header line: @SQ SN:NW_026963490.1 LN:20306 skipping SAM header line: @SQ SN:NW_026963491.1 LN:32733 skipping SAM header line: @SQ SN:NW_026963492.1 LN:41996 skipping SAM header line: @SQ SN:NW_026963493.1 LN:27834 skipping SAM header line: @SQ SN:NW_026963494.1 LN:23165 skipping SAM header line: @SQ SN:NW_026963495.1 LN:21648 skipping SAM header line: @SQ SN:NW_026963496.1 LN:27514 skipping SAM header line: @SQ SN:NW_026963497.1 LN:22988 skipping SAM header line: @SQ SN:NW_026963498.1 LN:27759 skipping SAM header line: @SQ SN:NW_026963499.1 LN:31922 skipping SAM header line: @SQ SN:NW_026963500.1 LN:55274 skipping SAM header line: @SQ SN:NW_026963501.1 LN:19548 skipping SAM header line: @SQ SN:NW_026963502.1 LN:19545 skipping SAM header line: @SQ SN:NW_026963503.1 LN:31769 skipping SAM header line: @SQ SN:NW_026963504.1 LN:20921 skipping SAM header line: @SQ SN:NW_026963505.1 LN:26440 skipping SAM header line: @SQ SN:NW_026963506.1 LN:36130 skipping SAM header line: @SQ SN:NW_026963507.1 LN:50233 skipping SAM header line: @SQ SN:NW_026963508.1 LN:37121 skipping SAM header line: @SQ SN:NW_026963509.1 LN:15802 skipping SAM header line: @SQ SN:NW_026963510.1 LN:21446 skipping SAM header line: @SQ SN:NW_026963511.1 LN:16917 skipping SAM header line: @SQ SN:NW_026963512.1 LN:24391 skipping SAM header line: @SQ SN:NW_026963513.1 LN:19462 skipping SAM header line: @SQ SN:NW_026963514.1 LN:24066 skipping SAM header line: @SQ SN:NW_026963515.1 LN:17459 skipping SAM header line: @SQ SN:NW_026963516.1 LN:18652 skipping SAM header line: @SQ SN:NW_026963517.1 LN:8618 skipping SAM header line: @SQ SN:NW_026963518.1 LN:20873 skipping SAM header line: @SQ SN:NW_026963519.1 LN:32632 skipping SAM header line: @SQ SN:NW_026963520.1 LN:36645 skipping SAM header line: @SQ SN:NW_026963521.1 LN:23952 skipping SAM header line: @SQ SN:NW_026963522.1 LN:22556 skipping SAM header line: @SQ SN:NW_026963523.1 LN:15718 skipping SAM header line: @SQ SN:NW_026963524.1 LN:50340 skipping SAM header line: @SQ SN:NW_026963525.1 LN:23212 skipping SAM header line: @SQ SN:NW_026963526.1 LN:18080 skipping SAM header line: @SQ SN:NW_026963527.1 LN:24976 skipping SAM header line: @SQ SN:NW_026963528.1 LN:20932 skipping SAM header line: @SQ SN:NW_026963529.1 LN:20070 skipping SAM header line: @SQ SN:NW_026963530.1 LN:43040 skipping SAM header line: @SQ SN:NW_026963531.1 LN:22373 skipping SAM header line: @SQ SN:NW_026963532.1 LN:21610 skipping SAM header line: @SQ SN:NW_026963533.1 LN:25225 skipping SAM header line: @SQ SN:NW_026963534.1 LN:22597 skipping SAM header line: @SQ SN:NW_026963535.1 LN:18239 skipping SAM header line: @SQ SN:NW_026963536.1 LN:19511 skipping SAM header line: @SQ SN:NW_026963537.1 LN:25744 skipping SAM header line: @SQ SN:NW_026963538.1 LN:33248 skipping SAM header line: @SQ SN:NW_026963539.1 LN:16194 skipping SAM header line: @SQ SN:NW_026963540.1 LN:29982 skipping SAM header line: @SQ SN:NW_026963541.1 LN:38121 skipping SAM header line: @SQ SN:NW_026963542.1 LN:23886 skipping SAM header line: @SQ SN:NW_026963543.1 LN:22120 skipping SAM header line: @SQ SN:NW_026963544.1 LN:40706 skipping SAM header line: @SQ SN:NW_026963545.1 LN:22511 skipping SAM header line: @SQ SN:NW_026963546.1 LN:29792 skipping SAM header line: @SQ SN:NW_026963547.1 LN:15422 skipping SAM header line: @SQ SN:NW_026963548.1 LN:28602 skipping SAM header line: @SQ SN:NW_026963549.1 LN:29363 skipping SAM header line: @SQ SN:NW_026963550.1 LN:42899 skipping SAM header line: @SQ SN:NW_026963551.1 LN:28569 skipping SAM header line: @SQ SN:NW_026963552.1 LN:47249 skipping SAM header line: @SQ SN:NW_026963553.1 LN:40295 skipping SAM header line: @SQ SN:NW_026963554.1 LN:23298 skipping SAM header line: @SQ SN:NW_026963555.1 LN:17778 skipping SAM header line: @SQ SN:NW_026963556.1 LN:40663 skipping SAM header line: @SQ SN:NW_026963557.1 LN:19240 skipping SAM header line: @SQ SN:NW_026963558.1 LN:53464 skipping SAM header line: @SQ SN:NW_026963559.1 LN:20496 skipping SAM header line: @SQ SN:NW_026963560.1 LN:18775 skipping SAM header line: @SQ SN:NW_026963561.1 LN:22720 skipping SAM header line: @SQ SN:NW_026963562.1 LN:29987 skipping SAM header line: @SQ SN:NW_026963563.1 LN:17061 skipping SAM header line: @SQ SN:NW_026963564.1 LN:19136 skipping SAM header line: @SQ SN:NW_026963565.1 LN:18594 skipping SAM header line: @SQ SN:NW_026963566.1 LN:21889 skipping SAM header line: @SQ SN:NW_026963567.1 LN:42002 skipping SAM header line: @SQ SN:NW_026963568.1 LN:28438 skipping SAM header line: @SQ SN:NW_026963569.1 LN:27574 skipping SAM header line: @SQ SN:NW_026963570.1 LN:26209 skipping SAM header line: @SQ SN:NW_026963571.1 LN:32307 skipping SAM header line: @SQ SN:NW_026963572.1 LN:23566 skipping SAM header line: @SQ SN:NW_026963573.1 LN:20539 skipping SAM header line: @SQ SN:NW_026963574.1 LN:19425 skipping SAM header line: @SQ SN:NW_026963575.1 LN:32111 skipping SAM header line: @SQ SN:NW_026963576.1 LN:34506 skipping SAM header line: @SQ SN:NW_026963577.1 LN:20176 skipping SAM header line: @SQ SN:NW_026963578.1 LN:24377 skipping SAM header line: @SQ SN:NW_026963579.1 LN:55969 skipping SAM header line: @SQ SN:NW_026963580.1 LN:27671 skipping SAM header line: @SQ SN:NW_026963581.1 LN:24138 skipping SAM header line: @SQ SN:NW_026963582.1 LN:97536 skipping SAM header line: @SQ SN:NW_026963583.1 LN:63607 skipping SAM header line: @SQ SN:NW_026963584.1 LN:34460 skipping SAM header line: @SQ SN:NW_026963585.1 LN:49376 skipping SAM header line: @SQ SN:NW_026963586.1 LN:27685 skipping SAM header line: @SQ SN:NW_026963587.1 LN:24514 skipping SAM header line: @SQ SN:NW_026963588.1 LN:48354 skipping SAM header line: @SQ SN:NW_026963589.1 LN:26316 skipping SAM header line: @SQ SN:NW_026963590.1 LN:22686 skipping SAM header line: @SQ SN:NW_026963591.1 LN:23266 skipping SAM header line: @SQ SN:NW_026963592.1 LN:19131 skipping SAM header line: @SQ SN:NW_026963593.1 LN:17046 skipping SAM header line: @SQ SN:NW_026963594.1 LN:23204 skipping SAM header line: @SQ SN:NW_026963595.1 LN:23624 skipping SAM header line: @SQ SN:NW_026963596.1 LN:19410 skipping SAM header line: @SQ SN:NW_026963597.1 LN:4560 skipping SAM header line: @SQ SN:NW_026963598.1 LN:29441 skipping SAM header line: @SQ SN:NW_026963599.1 LN:40152 skipping SAM header line: @SQ SN:NW_026963600.1 LN:21122 skipping SAM header line: @SQ SN:NW_026963601.1 LN:36140 skipping SAM header line: @SQ SN:NW_026963602.1 LN:18515 skipping SAM header line: @SQ SN:NW_026963603.1 LN:20142 skipping SAM header line: @SQ SN:NW_026963604.1 LN:25383 skipping SAM header line: @SQ SN:NW_026963605.1 LN:28494 skipping SAM header line: @SQ SN:NW_026963606.1 LN:18177 skipping SAM header line: @SQ SN:NW_026963607.1 LN:18627 skipping SAM header line: @SQ SN:NW_026963608.1 LN:22139 skipping SAM header line: @SQ SN:NW_026963609.1 LN:25457 skipping SAM header line: @SQ SN:NW_026963610.1 LN:20696 skipping SAM header line: @SQ SN:NW_026963611.1 LN:20121 skipping SAM header line: @SQ SN:NW_026963612.1 LN:23855 skipping SAM header line: @SQ SN:NW_026963613.1 LN:19683 skipping SAM header line: @SQ SN:NW_026963614.1 LN:17735 skipping SAM header line: @SQ SN:NW_026963615.1 LN:24639 skipping SAM header line: @SQ SN:NW_026963616.1 LN:36520 skipping SAM header line: @SQ SN:NW_026963617.1 LN:29370 skipping SAM header line: @SQ SN:NW_026963618.1 LN:25732 skipping SAM header line: @SQ SN:NW_026963619.1 LN:23735 skipping SAM header line: @SQ SN:NW_026963620.1 LN:21397 skipping SAM header line: @SQ SN:NW_026963621.1 LN:21572 skipping SAM header line: @SQ SN:NW_026963622.1 LN:25321 skipping SAM header line: @SQ SN:NW_026963623.1 LN:18363 skipping SAM header line: @SQ SN:NW_026963624.1 LN:20416 skipping SAM header line: @SQ SN:NW_026963625.1 LN:20064 skipping SAM header line: @SQ SN:NW_026963626.1 LN:37124 skipping SAM header line: @SQ SN:NW_026963627.1 LN:23433 skipping SAM header line: @SQ SN:NW_026963628.1 LN:24267 skipping SAM header line: @SQ SN:NW_026963629.1 LN:25181 skipping SAM header line: @SQ SN:NW_026963630.1 LN:20211 skipping SAM header line: @SQ SN:NW_026963631.1 LN:26376 skipping SAM header line: @SQ SN:NW_026963632.1 LN:20626 skipping SAM header line: @SQ SN:NW_026963633.1 LN:32619 skipping SAM header line: @SQ SN:NW_026963634.1 LN:21163 skipping SAM header line: @SQ SN:NW_026963635.1 LN:18606 skipping SAM header line: @SQ SN:NW_026963636.1 LN:18842 skipping SAM header line: @SQ SN:NW_026963637.1 LN:25787 skipping SAM header line: @SQ SN:NW_026963638.1 LN:21305 skipping SAM header line: @SQ SN:NW_026963639.1 LN:24239 skipping SAM header line: @SQ SN:NW_026963640.1 LN:24465 skipping SAM header line: @SQ SN:NW_026963641.1 LN:26936 skipping SAM header line: @SQ SN:NW_026963642.1 LN:22173 skipping SAM header line: @SQ SN:NW_026963643.1 LN:33930 skipping SAM header line: @SQ SN:NW_026963644.1 LN:30601 skipping SAM header line: @SQ SN:NW_026963645.1 LN:27131 skipping SAM header line: @SQ SN:NW_026963646.1 LN:21725 skipping SAM header line: @SQ SN:NW_026963647.1 LN:17559 skipping SAM header line: @SQ SN:NW_026963648.1 LN:26423 skipping SAM header line: @SQ SN:NW_026963649.1 LN:23991 skipping SAM header line: @SQ SN:NW_026963650.1 LN:21075 skipping SAM header line: @SQ SN:NW_026963651.1 LN:37035 skipping SAM header line: @SQ SN:NW_026963652.1 LN:20328 skipping SAM header line: @SQ SN:NW_026963653.1 LN:17920 skipping SAM header line: @SQ SN:NW_026963654.1 LN:25257 skipping SAM header line: @SQ SN:NW_026963655.1 LN:21611 skipping SAM header line: @SQ SN:NW_026963656.1 LN:31880 skipping SAM header line: @SQ SN:NW_026963657.1 LN:17971 skipping SAM header line: @SQ SN:NW_026963658.1 LN:17181 skipping SAM header line: @SQ SN:NW_026963659.1 LN:21841 skipping SAM header line: @SQ SN:NW_026963660.1 LN:48676 skipping SAM header line: @SQ SN:NW_026963661.1 LN:19775 skipping SAM header line: @SQ SN:NW_026963662.1 LN:35568 skipping SAM header line: @SQ SN:NW_026963663.1 LN:21947 skipping SAM header line: @SQ SN:NW_026963664.1 LN:24250 skipping SAM header line: @SQ SN:NW_026963665.1 LN:21491 skipping SAM header line: @SQ SN:NW_026963666.1 LN:22260 skipping SAM header line: @SQ SN:NW_026963667.1 LN:28403 skipping SAM header line: @SQ SN:NW_026963668.1 LN:19543 skipping SAM header line: @SQ SN:NW_026963669.1 LN:59060 skipping SAM header line: @SQ SN:NW_026963670.1 LN:23088 skipping SAM header line: @SQ SN:NW_026963671.1 LN:25210 skipping SAM header line: @SQ SN:NW_026963672.1 LN:29503 skipping SAM header line: @SQ SN:NW_026963673.1 LN:26257 skipping SAM header line: @SQ SN:NW_026963674.1 LN:22982 skipping SAM header line: @SQ SN:NW_026963675.1 LN:20127 skipping SAM header line: @SQ SN:NW_026963676.1 LN:21567 skipping SAM header line: @SQ SN:NW_026963677.1 LN:25240 skipping SAM header line: @SQ SN:NW_026963678.1 LN:25959 skipping SAM header line: @SQ SN:NW_026963679.1 LN:23464 skipping SAM header line: @SQ SN:NW_026963680.1 LN:23133 skipping SAM header line: @SQ SN:NW_026963681.1 LN:22873 skipping SAM header line: @SQ SN:NW_026963682.1 LN:27482 skipping SAM header line: @SQ SN:NW_026963683.1 LN:23835 skipping SAM header line: @SQ SN:NW_026963684.1 LN:18595 skipping SAM header line: @SQ SN:NW_026963685.1 LN:25677 skipping SAM header line: @SQ SN:NW_026963686.1 LN:25352 skipping SAM header line: @SQ SN:NW_026963687.1 LN:26654 skipping SAM header line: @SQ SN:NW_026963688.1 LN:16682 skipping SAM header line: @SQ SN:NW_026963689.1 LN:43634 skipping SAM header line: @SQ SN:NW_026963690.1 LN:20473 skipping SAM header line: @SQ SN:NW_026963691.1 LN:24782 skipping SAM header line: @SQ SN:NW_026963692.1 LN:27429 skipping SAM header line: @SQ SN:NW_026963693.1 LN:22023 skipping SAM header line: @SQ SN:NW_026963694.1 LN:22432 skipping SAM header line: @SQ SN:NW_026963695.1 LN:27801 skipping SAM header line: @SQ SN:NW_026963696.1 LN:89040 skipping SAM header line: @SQ SN:NW_026963697.1 LN:29127 skipping SAM header line: @SQ SN:NW_026963698.1 LN:22758 skipping SAM header line: @SQ SN:NW_026963699.1 LN:21265 skipping SAM header line: @SQ SN:NW_026963700.1 LN:32610 skipping SAM header line: @SQ SN:NW_026963701.1 LN:40879 skipping SAM header line: @SQ SN:NW_026963702.1 LN:25242 skipping SAM header line: @SQ SN:NW_026963703.1 LN:27008 skipping SAM header line: @SQ SN:NW_026963704.1 LN:21375 skipping SAM header line: @SQ SN:NW_026963705.1 LN:33180 skipping SAM header line: @SQ SN:NW_026963706.1 LN:26193 skipping SAM header line: @SQ SN:NW_026963707.1 LN:21669 skipping SAM header line: @SQ SN:NW_026963708.1 LN:25618 skipping SAM header line: @SQ SN:NW_026963709.1 LN:25056 skipping SAM header line: @SQ SN:NW_026963710.1 LN:22608 skipping SAM header line: @SQ SN:NW_026963711.1 LN:23115 skipping SAM header line: @SQ SN:NW_026963712.1 LN:22043 skipping SAM header line: @SQ SN:NW_026963713.1 LN:25891 skipping SAM header line: @SQ SN:NW_026963714.1 LN:24871 skipping SAM header line: @SQ SN:NW_026963715.1 LN:22811 skipping SAM header line: @SQ SN:NW_026963716.1 LN:38945 skipping SAM header line: @SQ SN:NW_026963717.1 LN:35514 skipping SAM header line: @SQ SN:NW_026963718.1 LN:21356 skipping SAM header line: @SQ SN:NW_026963719.1 LN:28341 skipping SAM header line: @SQ SN:NW_026963720.1 LN:20602 skipping SAM header line: @SQ SN:NW_026963721.1 LN:20995 skipping SAM header line: @SQ SN:NW_026963722.1 LN:21623 skipping SAM header line: @SQ SN:NW_026963723.1 LN:22869 skipping SAM header line: @SQ SN:NW_026963724.1 LN:22118 skipping SAM header line: @SQ SN:NW_026963725.1 LN:27787 skipping SAM header line: @SQ SN:NW_026963726.1 LN:28118 skipping SAM header line: @SQ SN:NW_026963727.1 LN:22374 skipping SAM header line: @SQ SN:NW_026963728.1 LN:26688 skipping SAM header line: @SQ SN:NW_026963729.1 LN:18680 skipping SAM header line: @SQ SN:NW_026963730.1 LN:26877 skipping SAM header line: @SQ SN:NW_026963731.1 LN:22152 skipping SAM header line: @SQ SN:NW_026963732.1 LN:21122 skipping SAM header line: @SQ SN:NW_026963733.1 LN:30669 skipping SAM header line: @SQ SN:NW_026963734.1 LN:21233 skipping SAM header line: @SQ SN:NW_026963735.1 LN:20919 skipping SAM header line: @SQ SN:NW_026963736.1 LN:26026 skipping SAM header line: @SQ SN:NW_026963737.1 LN:15473 skipping SAM header line: @SQ SN:NW_026963738.1 LN:23824 skipping SAM header line: @SQ SN:NW_026963739.1 LN:19804 skipping SAM header line: @SQ SN:NW_026963740.1 LN:17713 skipping SAM header line: @SQ SN:NW_026963741.1 LN:20707 skipping SAM header line: @SQ SN:NW_026963742.1 LN:18963 skipping SAM header line: @SQ SN:NW_026963743.1 LN:21370 skipping SAM header line: @SQ SN:NW_026963744.1 LN:22821 skipping SAM header line: @SQ SN:NW_026963745.1 LN:20669 skipping SAM header line: @SQ SN:NW_026963746.1 LN:25286 skipping SAM header line: @SQ SN:NW_026963747.1 LN:21276 skipping SAM header line: @SQ SN:NW_026963748.1 LN:22489 skipping SAM header line: @SQ SN:NW_026963749.1 LN:18369 skipping SAM header line: @SQ SN:NW_026963750.1 LN:22802 skipping SAM header line: @SQ SN:NW_026963751.1 LN:24575 skipping SAM header line: @SQ SN:NW_026963752.1 LN:23655 skipping SAM header line: @SQ SN:NW_026963753.1 LN:26162 skipping SAM header line: @SQ SN:NW_026963754.1 LN:23060 skipping SAM header line: @SQ SN:NW_026963755.1 LN:23954 skipping SAM header line: @SQ SN:NW_026963756.1 LN:21792 skipping SAM header line: @SQ SN:NW_026963757.1 LN:32711 skipping SAM header line: @SQ SN:NW_026963758.1 LN:26150 skipping SAM header line: @SQ SN:NW_026963759.1 LN:24511 skipping SAM header line: @SQ SN:NW_026963760.1 LN:21863 skipping SAM header line: @SQ SN:NW_026963761.1 LN:29603 skipping SAM header line: @SQ SN:NW_026963762.1 LN:14940 skipping SAM header line: @SQ SN:NW_026963763.1 LN:20415 skipping SAM header line: @SQ SN:NW_026963764.1 LN:28644 skipping SAM header line: @SQ SN:NW_026963765.1 LN:26859 skipping SAM header line: @SQ SN:NW_026963766.1 LN:21572 skipping SAM header line: @SQ SN:NW_026963767.1 LN:11867 skipping SAM header line: @SQ SN:NW_026963768.1 LN:22422 skipping SAM header line: @SQ SN:NW_026963769.1 LN:19132 skipping SAM header line: @SQ SN:NW_026963770.1 LN:17338 skipping SAM header line: @SQ SN:NW_026963771.1 LN:24159 skipping SAM header line: @SQ SN:NW_026963772.1 LN:22295 skipping SAM header line: @SQ SN:NW_026963773.1 LN:15046 skipping SAM header line: @SQ SN:NW_026963774.1 LN:18598 skipping SAM header line: @SQ SN:NW_026963775.1 LN:22167 skipping SAM header line: @SQ SN:NW_026963776.1 LN:16973 skipping SAM header line: @SQ SN:NW_026963777.1 LN:18602 skipping SAM header line: @SQ SN:NW_026963778.1 LN:24241 skipping SAM header line: @SQ SN:NW_026963779.1 LN:27924 skipping SAM header line: @SQ SN:NW_026963780.1 LN:25424 skipping SAM header line: @SQ SN:NW_026963781.1 LN:28413 skipping SAM header line: @SQ SN:NW_026963782.1 LN:20838 skipping SAM header line: @SQ SN:NW_026963783.1 LN:22467 skipping SAM header line: @SQ SN:NW_026963784.1 LN:25012 skipping SAM header line: @SQ SN:NW_026963785.1 LN:13181 skipping SAM header line: @SQ SN:NW_026963786.1 LN:18105 skipping SAM header line: @SQ SN:NW_026963787.1 LN:18769 skipping SAM header line: @SQ SN:NW_026963788.1 LN:21775 skipping SAM header line: @SQ SN:NW_026963789.1 LN:26327 skipping SAM header line: @SQ SN:NW_026963790.1 LN:14514 skipping SAM header line: @SQ SN:NW_026963791.1 LN:20050 skipping SAM header line: @SQ SN:NW_026963792.1 LN:18784 skipping SAM header line: @SQ SN:NW_026963793.1 LN:20749 skipping SAM header line: @SQ SN:NW_026963794.1 LN:13251 skipping SAM header line: @SQ SN:NW_026963795.1 LN:20766 skipping SAM header line: @SQ SN:NW_026963796.1 LN:23492 skipping SAM header line: @SQ SN:NW_026963797.1 LN:20235 skipping SAM header line: @SQ SN:NW_026963798.1 LN:13457 skipping SAM header line: @SQ SN:NW_026963799.1 LN:17957 skipping SAM header line: @SQ SN:NW_026963800.1 LN:22384 skipping SAM header line: @SQ SN:NW_026963801.1 LN:31865 skipping SAM header line: @SQ SN:NW_026963802.1 LN:24022 skipping SAM header line: @SQ SN:NW_026963803.1 LN:26219 skipping SAM header line: @SQ SN:NW_026963804.1 LN:24043 skipping SAM header line: @SQ SN:NW_026963805.1 LN:28961 skipping SAM header line: @SQ SN:NW_026963806.1 LN:14045 skipping SAM header line: @SQ SN:NW_026963807.1 LN:15082 skipping SAM header line: @SQ SN:NW_026963808.1 LN:24314 skipping SAM header line: @SQ SN:NW_026963809.1 LN:20441 skipping SAM header line: @SQ SN:NW_026963810.1 LN:10923 skipping SAM header line: @SQ SN:NW_026963811.1 LN:26407 skipping SAM header line: @SQ SN:NW_026963812.1 LN:14166 skipping SAM header line: @SQ SN:NW_026963813.1 LN:10138 skipping SAM header line: @SQ SN:NW_026963814.1 LN:8703 skipping SAM header line: @SQ SN:NW_026963815.1 LN:16400 skipping SAM header line: @SQ SN:NC_007687.1 LN:18652 skipping SAM header line: @PG ID:Bismark VN:v0.24.0 CL:"bismark --path_to_bowtie2 /home/shared/bowtie2-2.4.4-linux-x86_64 -genome /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/22-genome-prep/ -p 12 -score_min L,0,-0.6 --non_directional -1 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25.1-93M-cov-recovery/reads/93M_R1.fastp-trim.fq.gz -2 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25.1-93M-cov-recovery/reads/93M_R2.fastp-trim.fq.gz -o /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/23-bismark-align --basename 93M" skipping SAM header line: @PG ID:samtools PN:samtools PP:Bismark VN:1.19.2 CL:/usr/bin/samtools view -bSh - skipping SAM header line: @PG ID:samtools.1 PN:samtools PP:samtools VN:1.19.2 CL:/usr/bin/samtools view -h --threads 1 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/23-bismark-align/93M_pe.bam skipping SAM header line: @PG ID:samtools.2 PN:samtools PP:samtools.1 VN:1.19.2 CL:/usr/bin/samtools view -bS --threads 1 - skipping SAM header line: @PG ID:samtools.3 PN:samtools PP:samtools.2 VN:1.19.2 CL:/usr/bin/samtools view -h /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/24-dedup-sort/93M_pe.deduplicated.bam Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 Processed lines: 1500000 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lines: 10000000 Processed lines: 10000000 Processed lines: 9500000 Processed lines: 9500000 Processed lines: 9500000 Processed lines: 10000000 Processed lines: 10000000 Processed lines: 9500000 Processed lines: 10000000 Processed lines: 10000000 Processed lines: 10500000 Processed lines: 9500000 Processed lines: 10000000 Processed lines: 10500000 Processed lines: 10500000 Processed lines: 10500000 Processed lines: 9500000 Processed lines: 10500000 Processed lines: 10500000 Processed lines: 10500000 Processed lines: 10000000 Processed lines: 10000000 Processed lines: 10500000 Processed lines: 10500000 Processed lines: 10000000 Processed lines: 10500000 Processed lines: 10500000 Processed lines: 10500000 Processed lines: 10000000 Processed lines: 10000000 Processed lines: 10500000 Processed lines: 10500000 Processed lines: 10500000 Processed lines: 10500000 Processed lines: 10000000 Processed lines: 11000000 Processed lines: 10500000 Processed lines: 11000000 Processed lines: 11000000 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lines: 11000000 Processed lines: 11000000 Processed lines: 11000000 Processed lines: 11500000 Processed lines: 11500000 Processed lines: 11500000 Processed lines: 11500000 Processed lines: 11500000 Processed lines: 12000000 Processed lines: 12000000 Processed lines: 12000000 Processed lines: 12000000 Processed lines: 12000000 Processed lines: 12000000 Processed lines: 12000000 Processed lines: 12000000 Processed lines: 12000000 Processed lines: 11000000 Processed lines: 12000000 Processed lines: 12000000 Processed lines: 11500000 Processed lines: 11500000 Processed lines: 12000000 Processed lines: 12000000 Processed lines: 11500000 Processed lines: 11500000 Processed lines: 11500000 Processed lines: 12000000 Processed lines: 12000000 Processed lines: 12000000 Processed lines: 12000000 Processed lines: 12500000 Processed lines: 12500000 Processed lines: 12500000 Processed lines: 12000000 Processed lines: 12500000 Processed lines: 12500000 Processed lines: 12500000 Processed lines: 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lines: 13000000 Processed lines: 14000000 Processed lines: 14000000 Processed lines: 14000000 Processed lines: 13500000 Processed lines: 13500000 Processed lines: 13500000 Processed lines: 13500000 Processed lines: 14500000 Processed lines: 14000000 Processed lines: 14000000 Processed lines: 13500000 Processed lines: 14500000 Processed lines: 14500000 Processed lines: 14500000 Processed lines: 14500000 Processed lines: 14000000 Processed lines: 14000000 Processed lines: 14500000 Processed lines: 14500000 Processed lines: 14500000 Processed lines: 14500000 Processed lines: 14500000 Processed lines: 14500000 Processed lines: 13500000 Processed lines: 14500000 Processed lines: 14500000 Processed lines: 14500000 Processed lines: 14000000 Processed lines: 14000000 Processed lines: 14000000 Processed lines: 15000000 Processed lines: 14500000 Processed lines: 14000000 Processed lines: 15000000 Processed lines: 14500000 Processed lines: 15000000 Processed lines: 14000000 Processed lines: 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Processed lines: 39000000 Processed lines: 39000000 Processed lines: 39500000 Processed lines: 40000000 Processed lines: 39000000 Processed lines: 38000000 Processed lines: 40500000 Processed lines: 39500000 Processed lines: 39000000 Processed lines: 40000000 Processed lines: 40000000 Processed lines: 40500000 Processed lines: 40000000 Processed lines: 40000000 Processed lines: 39000000 Processed lines: 40000000 Processed lines: 40000000 Processed lines: 40000000 Processed lines: 38000000 Processed lines: 40000000 Processed lines: 40500000 Processed lines: 40000000 Processed lines: 39500000 Processed lines: 39500000 Processed lines: 40000000 Processed lines: 40000000 Processed lines: 40000000 Processed lines: 40000000 Processed lines: 38500000 Finished processing child process. Exiting.. Processed lines: 39500000 Finished processing child process. Exiting.. Processed lines: 40500000 Processed lines: 40500000 Processed lines: 38500000 Processed lines: 40500000 Processed lines: 39500000 Processed lines: 40500000 Processed lines: 40500000 Processed lines: 40500000 Processed lines: 40500000 Processed lines: 40500000 Now waiting for all child processes to complete Processed lines: 40500000 Processed lines: 39500000 Processed lines: 40500000 Processed lines: 40500000 Processed lines: 40500000 Processed lines: 40000000 Processed lines: 40500000 Processed lines: 40000000 Processed lines: 40500000 Processed lines: 39000000 Processed lines: 40000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 39000000 Processed lines: 40000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 40000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 40500000 Processed lines: 40500000 Processed lines: 40500000 Processed lines: 39500000 Processed lines: 39500000 Processed lines: 40500000 Processed lines: 40500000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 40000000 Finished processing child process. Exiting.. Processed lines: 40000000 Finished processing child process. Exiting.. Processed lines: 40500000 Processed lines: 40500000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. All child process successfully finished. Merging individual splitting reports into overall report: '/home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt' Merging from these individual files: /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.1 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.2 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.3 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.4 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.5 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.6 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.7 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.8 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.9 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.10 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.11 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.12 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.13 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.14 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.15 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.16 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.17 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.18 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.19 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.20 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.21 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.22 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.23 /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.24 Processed 40947587 lines in total Total number of methylation call strings processed: 81895174 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1172281247 Total methylated C's in CpG context: 15990661 Total methylated C's in CHG context: 1962702 Total methylated C's in CHH context: 9974167 Total C to T conversions in CpG context: 121251966 Total C to T conversions in CHG context: 186974635 Total C to T conversions in CHH context: 836127116 C methylated in CpG context: 11.7% C methylated in non-CpG context: 1.2% Merging individual M-bias reports into overall M-bias statistics from these 24 individual files: /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.1.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.2.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.3.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.4.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.5.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.6.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.7.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.8.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.9.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.10.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.11.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.12.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.13.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.14.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.15.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.16.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.17.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.18.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.19.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.20.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.21.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.22.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.23.mbias /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated_splitting_report.txt.24.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 131 Maximum read length of Read 2: 131 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 131 Maximum read length of Read 2: 131 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/CpG_context_93M_pe.deduplicated.txt contains data -> kept /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/Non_CpG_context_93M_pe.deduplicated.txt contains data -> kept Using these input files: /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/CpG_context_93M_pe.deduplicated.txt /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/Non_CpG_context_93M_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: 93M_pe.deduplicated.bedGraph.gz output directory: >/home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 50% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/CpG_context_93M_pe.deduplicated.txt Writing bedGraph to file: 93M_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: 93M_pe.deduplicated.bismark.cov.gz Changed directory to /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/ Now writing methylation information for file >>CpG_context_93M_pe.deduplicated.txt<< to individual files for each chromosome Finished writing out individual chromosome files for CpG_context_93M_pe.deduplicated.txt Collecting temporary chromosome file information... Processing the following input file(s): CpG_context_93M_pe.deduplicated.txt.chrNC_086381.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNC_086383.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNC_086386.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNC_086374.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963298.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNC_086376.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNC_086382.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNC_086385.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNC_086375.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNC_086373.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963292.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNC_086378.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNC_086380.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNC_086379.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963290.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNC_086377.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963304.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNC_086384.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963372.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963294.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963314.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963311.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963302.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963340.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963321.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963778.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963293.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963310.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963295.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963317.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963332.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963297.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963342.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963322.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963480.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963296.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963345.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963305.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963378.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963301.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963318.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963315.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963797.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963376.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963375.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963313.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963812.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963303.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963347.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963701.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963308.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963354.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963537.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963350.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963341.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963764.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963502.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963443.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963370.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963320.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963312.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963382.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963789.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963784.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963669.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963725.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963337.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963570.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963695.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963357.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963564.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963346.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963542.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963373.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963300.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963363.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963804.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963343.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963319.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963629.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963335.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963585.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963436.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963427.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963560.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963781.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963352.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963424.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963291.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963331.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963323.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963722.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963368.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963493.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963495.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963721.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963418.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963309.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963371.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963475.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963662.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963753.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963333.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963507.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963686.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963601.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963479.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963811.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963518.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963307.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963638.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963610.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963299.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963581.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963329.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963650.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963693.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963316.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963567.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963473.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963433.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963739.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963593.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963670.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963402.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963655.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963431.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963400.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963344.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963447.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963338.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963445.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963738.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963684.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963743.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963623.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963462.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963471.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNC_007687.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963772.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963782.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963470.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963496.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963719.1.methXtractor.temp 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CpG_context_93M_pe.deduplicated.txt.chrNW_026963425.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963405.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963543.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963508.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963467.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963389.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963421.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963351.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963414.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963531.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963618.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963492.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963491.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963438.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963550.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963416.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963591.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963388.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963584.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963442.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963626.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963336.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963805.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963411.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963398.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963637.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963594.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963657.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963509.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963680.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963761.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963633.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963659.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963556.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963689.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963632.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963401.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963700.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963656.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963803.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963552.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963687.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963647.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963664.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963434.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963428.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963403.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963377.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963814.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963783.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963356.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963384.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963751.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963660.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963673.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963525.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963798.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963705.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963547.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963381.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963628.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963429.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963468.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963790.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963734.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963681.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963744.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963807.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963644.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963334.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963521.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963561.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963648.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963802.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963589.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963749.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963515.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963458.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963562.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963672.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963379.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963612.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963423.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963760.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963517.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963532.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963545.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963770.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963590.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963698.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963497.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963477.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963527.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963788.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963692.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963640.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963551.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963574.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963482.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963539.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963498.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963699.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963456.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963652.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963452.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963767.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963622.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963765.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963757.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963460.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963793.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963769.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963422.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963501.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963490.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963348.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963499.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963779.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963703.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963762.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963446.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963393.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963359.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963627.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963604.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963727.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963697.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963720.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963504.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963488.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963611.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963750.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963444.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963728.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963598.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963741.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963526.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963736.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963474.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963587.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963413.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963737.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963776.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963617.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963733.1.methXtractor.temp CpG_context_93M_pe.deduplicated.txt.chrNW_026963747.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNC_007687.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNC_007687.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNC_086373.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNC_086373.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNC_086374.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNC_086374.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNC_086375.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNC_086375.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNC_086376.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNC_086376.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNC_086377.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNC_086377.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNC_086378.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNC_086378.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNC_086379.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNC_086379.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNC_086380.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNC_086380.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNC_086381.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNC_086381.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNC_086382.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNC_086382.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNC_086383.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNC_086383.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNC_086384.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNC_086384.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNC_086385.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNC_086385.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNC_086386.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNC_086386.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963290.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963290.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963291.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963291.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963292.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963292.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963293.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963293.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963294.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963294.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963295.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963295.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963296.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963296.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963297.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963297.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963298.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963298.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963299.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963299.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963300.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963300.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963301.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963301.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963302.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963302.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963303.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963303.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963304.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963304.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963305.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963305.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963306.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963306.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963307.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963307.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963308.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963308.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963309.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963309.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963310.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963310.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963311.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963311.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963312.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963312.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963313.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963313.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963314.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963314.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963315.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963315.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963316.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963316.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963317.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963317.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963318.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963318.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963319.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963319.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963320.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963320.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963321.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963321.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963322.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963322.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963323.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963323.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963324.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963324.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963325.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963325.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963326.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963326.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963327.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963327.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963329.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963329.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963330.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963330.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963331.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963331.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963332.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963332.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963333.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963333.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963334.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963334.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963335.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963335.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963336.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963336.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963337.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963337.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963338.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963338.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963339.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963339.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963340.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963340.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963341.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963341.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963342.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963342.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963343.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963343.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963344.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963344.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963345.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963345.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963346.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963346.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963347.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963347.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963348.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963348.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963349.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963349.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963350.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963350.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963351.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963351.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963352.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963352.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963354.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963354.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963355.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963355.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963356.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963356.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963357.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963357.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963358.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963358.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963359.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963359.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963360.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963360.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963361.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963361.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963362.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963362.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963363.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963363.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963364.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963364.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963365.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963365.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963366.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963366.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963367.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963367.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963368.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963368.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963369.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963369.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963370.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963370.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963371.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963371.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963372.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963372.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963373.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963373.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963374.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963374.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963375.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963375.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963376.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963376.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963377.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963377.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963378.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963378.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963379.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963379.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963380.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963380.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963381.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963381.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963382.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963382.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963383.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963383.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963384.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963384.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963385.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963385.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963386.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963386.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963387.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963387.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963388.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963388.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963389.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963389.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963390.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963390.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963391.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963391.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963392.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963392.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963393.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963393.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963394.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963394.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963395.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963395.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963396.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963396.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963397.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963397.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963398.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963398.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963399.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963399.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963400.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963400.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963401.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963401.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963402.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963402.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963403.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963403.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963404.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963404.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963405.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963405.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963406.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963406.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963407.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963407.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963408.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963408.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963409.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963409.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963410.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963410.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963411.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963411.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963412.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963412.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963413.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963413.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963414.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963414.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963415.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963415.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963416.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963416.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963417.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963417.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963418.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963418.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963419.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963419.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963420.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963420.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963421.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963421.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963422.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963422.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963423.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963423.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963424.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963424.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963425.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963425.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963426.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963426.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963427.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963427.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963428.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963428.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963429.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963429.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963430.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963430.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963431.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963431.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963432.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963432.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963433.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963433.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963434.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963434.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963435.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963435.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963436.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963436.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963437.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963437.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963438.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963438.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963439.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963439.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963440.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963440.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963441.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963441.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963442.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963442.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963443.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963443.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963444.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963444.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963445.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963445.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963446.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963446.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963447.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963447.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963448.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963448.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963449.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963449.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963450.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963450.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963451.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963451.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963452.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963452.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963453.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963453.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963455.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963455.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963456.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963456.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963457.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963457.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963458.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963458.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963459.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963459.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963460.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963460.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963461.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963461.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963462.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963462.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963463.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963463.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963467.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963467.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963468.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963468.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963470.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963470.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963471.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963471.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963472.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963472.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963473.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963473.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963474.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963474.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963475.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963475.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963476.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963476.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963477.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963477.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963479.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963479.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963480.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963480.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963481.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963481.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963482.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963482.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963484.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963484.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963486.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963486.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963487.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963487.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963488.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963488.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963489.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963489.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963490.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963490.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963491.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963491.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963492.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963492.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963493.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963493.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963494.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963494.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963495.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963495.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963496.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963496.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963497.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963497.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963498.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963498.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963499.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963499.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963500.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963500.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963501.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963501.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963502.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963502.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963503.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963503.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963504.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963504.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963505.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963505.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963506.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963506.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963507.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963507.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963508.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963508.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963509.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963509.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963512.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963512.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963513.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963513.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963514.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963514.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963515.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963515.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963516.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963516.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963517.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963517.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963518.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963518.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963519.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963519.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963520.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963520.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963521.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963521.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963523.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963523.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963524.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963524.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963525.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963525.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963526.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963526.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963527.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963527.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963528.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963528.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963530.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963530.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963531.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963531.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963532.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963532.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963533.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963533.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963534.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963534.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963535.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963535.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963537.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963537.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963538.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963538.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963539.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963539.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963540.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963540.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963541.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963541.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963542.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963542.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963543.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963543.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963544.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963544.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963545.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963545.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963546.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963546.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963547.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963547.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963548.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963548.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963549.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963549.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963550.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963550.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963551.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963551.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963552.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963552.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963553.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963553.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963554.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963554.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963555.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963555.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963556.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963556.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963557.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963557.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963558.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963558.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963559.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963559.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963560.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963560.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963561.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963561.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963562.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963562.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963563.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963563.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963564.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963564.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963565.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963565.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963567.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963567.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963568.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963568.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963569.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963569.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963570.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963570.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963571.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963571.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963572.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963572.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963573.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963573.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963574.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963574.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963575.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963575.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963576.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963576.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963577.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963577.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963579.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963579.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963580.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963580.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963581.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963581.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963582.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963582.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963583.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963583.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963584.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963584.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963585.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963585.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963587.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963587.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963588.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963588.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963589.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963589.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963590.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963590.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963591.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963591.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963593.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963593.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963594.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963594.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963595.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963595.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963596.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963596.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963598.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963598.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963599.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963599.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963600.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963600.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963601.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963601.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963603.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963603.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963604.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963604.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963605.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963605.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963607.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963607.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963608.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963608.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963609.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963609.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963610.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963610.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963611.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963611.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963612.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963612.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963613.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963613.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963614.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963614.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963617.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963617.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963618.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963618.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963620.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963620.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963621.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963621.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963622.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963622.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963623.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963623.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963624.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963624.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963625.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963625.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963626.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963626.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963627.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963627.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963628.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963628.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963629.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963629.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963631.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963631.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963632.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963632.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963633.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963633.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963634.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963634.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963635.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963635.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963636.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963636.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963637.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963637.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963638.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963638.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963639.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963639.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963640.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963640.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963641.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963641.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963642.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963642.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963644.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963644.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963645.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963645.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963646.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963646.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963647.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963647.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963648.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963648.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963649.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963649.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963650.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963650.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963652.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963652.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963653.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963653.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963654.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963654.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963655.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963655.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963656.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963656.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963657.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963657.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963658.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963658.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963659.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963659.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963660.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963660.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963661.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963661.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963662.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963662.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963663.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963663.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963664.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963664.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963665.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963665.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963666.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963666.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963667.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963667.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963668.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963668.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963669.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963669.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963670.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963670.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963671.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963671.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963672.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963672.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963673.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963673.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963674.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963674.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963675.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963675.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963676.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963676.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963677.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963677.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963679.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963679.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963680.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963680.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963681.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963681.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963682.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963682.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963683.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963683.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963684.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963684.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963685.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963685.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963686.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963686.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963687.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963687.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963688.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963688.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963689.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963689.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963690.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963690.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963691.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963691.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963692.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963692.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963693.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963693.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963694.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963694.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963695.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963695.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963696.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963696.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963697.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963697.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963698.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963698.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963699.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963699.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963700.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963700.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963701.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963701.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963702.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963702.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963703.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963703.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963704.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963704.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963705.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963705.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963706.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963706.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963707.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963707.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963708.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963708.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963709.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963709.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963710.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963710.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963711.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963711.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963712.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963712.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963713.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963713.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963715.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963715.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963716.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963716.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963717.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963717.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963718.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963718.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963719.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963719.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963720.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963720.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963721.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963721.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963722.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963722.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963723.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963723.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963725.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963725.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963726.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963726.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963727.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963727.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963728.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963728.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963730.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963730.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963731.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963731.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963732.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963732.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963733.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963733.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963734.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963734.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963735.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963735.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963736.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963736.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963737.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963737.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963738.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963738.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963739.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963739.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963741.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963741.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963742.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963742.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963743.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963743.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963744.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963744.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963745.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963745.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963746.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963746.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963747.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963747.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963748.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963748.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963749.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963749.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963750.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963750.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963751.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963751.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963752.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963752.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963753.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963753.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963754.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963754.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963755.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963755.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963756.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963756.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963757.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963757.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963758.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963758.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963759.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963759.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963760.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963760.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963761.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963761.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963762.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963762.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963764.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963764.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963765.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963765.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963766.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963766.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963767.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963767.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963768.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963768.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963769.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963769.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963770.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963770.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963771.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963771.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963772.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963772.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963773.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963773.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963776.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963776.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963777.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963777.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963778.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963778.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963779.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963779.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963780.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963780.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963781.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963781.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963782.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963782.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963783.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963783.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963784.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963784.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963785.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963785.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963786.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963786.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963787.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963787.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963788.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963788.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963789.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963789.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963790.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963790.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963793.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963793.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963794.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963794.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963795.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963795.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963796.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963796.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963797.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963797.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963798.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963798.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963800.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963800.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963801.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963801.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963802.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963802.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963803.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963803.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963804.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963804.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963805.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963805.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963806.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963806.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963807.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963807.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963808.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963808.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963811.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963811.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963812.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963812.1.methXtractor.temp Sorting input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963814.1.methXtractor.temp by positions (using -S of 50%) Successfully deleted the temporary input file CpG_context_93M_pe.deduplicated.txt.chrNW_026963814.1.methXtractor.temp Finished BedGraph conversion ... [2026-07-06 06:06:51] Merging CpG strands (coverage2cytosine) ... Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/code/< Genome directory: >/home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/22-genome-prep/< Coverage threshold 0 (all positions will be reported, default) CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/22-genome-prep/ chr NC_086373.1 (113486924 bp) chr NC_086374.1 (103707636 bp) chr NC_086375.1 (94312406 bp) chr NC_086376.1 (96324366 bp) chr NC_086377.1 (88129055 bp) chr NC_086378.1 (91445414 bp) chr NC_086379.1 (85406108 bp) chr NC_086380.1 (80675551 bp) chr NC_086381.1 (82295107 bp) chr NC_086382.1 (78455819 bp) chr NC_086383.1 (71253669 bp) chr NC_086384.1 (60198110 bp) chr NC_086385.1 (63222996 bp) chr NC_086386.1 (81773519 bp) chr NW_026963290.1 (8139973 bp) chr NW_026963291.1 (22515 bp) chr NW_026963292.1 (5553665 bp) chr NW_026963293.1 (500000 bp) chr NW_026963294.1 (5965364 bp) chr NW_026963295.1 (6074899 bp) chr NW_026963296.1 (3628579 bp) chr NW_026963297.1 (3444836 bp) chr NW_026963298.1 (2989614 bp) chr NW_026963299.1 (250000 bp) chr NW_026963300.1 (356632 bp) chr NW_026963301.1 (4334515 bp) chr NW_026963302.1 (4076163 bp) chr NW_026963303.1 (250000 bp) chr NW_026963304.1 (4603332 bp) chr NW_026963305.1 (1250000 bp) chr NW_026963306.1 (121029 bp) chr NW_026963307.1 (125000 bp) chr NW_026963308.1 (418548 bp) chr NW_026963309.1 (710015 bp) chr NW_026963310.1 (3670610 bp) chr NW_026963311.1 (1420456 bp) chr NW_026963312.1 (1013396 bp) chr NW_026963313.1 (825963 bp) chr NW_026963314.1 (2737876 bp) chr NW_026963315.1 (4066460 bp) chr NW_026963316.1 (450949 bp) chr NW_026963317.1 (4467411 bp) chr NW_026963318.1 (3454087 bp) chr NW_026963319.1 (250000 bp) chr NW_026963320.1 (175774 bp) chr NW_026963321.1 (741490 bp) chr NW_026963322.1 (899002 bp) chr NW_026963323.1 (961498 bp) chr NW_026963324.1 (293216 bp) chr NW_026963325.1 (26743 bp) chr NW_026963326.1 (30845 bp) chr NW_026963327.1 (35643 bp) chr NW_026963328.1 (31473 bp) chr NW_026963329.1 (267817 bp) chr NW_026963330.1 (38397 bp) chr NW_026963331.1 (73781 bp) chr NW_026963332.1 (1260917 bp) chr NW_026963333.1 (250000 bp) chr NW_026963334.1 (25388 bp) chr NW_026963335.1 (565390 bp) chr NW_026963336.1 (26109 bp) chr NW_026963337.1 (659095 bp) chr NW_026963338.1 (357655 bp) chr NW_026963339.1 (277346 bp) chr NW_026963340.1 (4220937 bp) chr NW_026963341.1 (122847 bp) chr NW_026963342.1 (58283 bp) chr NW_026963343.1 (556242 bp) chr NW_026963344.1 (203489 bp) chr NW_026963345.1 (224476 bp) chr NW_026963346.1 (651063 bp) chr NW_026963347.1 (1227606 bp) chr NW_026963348.1 (21803 bp) chr NW_026963349.1 (40271 bp) chr NW_026963350.1 (1415666 bp) chr NW_026963351.1 (17622 bp) chr NW_026963352.1 (337009 bp) chr NW_026963353.1 (20381 bp) chr NW_026963354.1 (394918 bp) chr NW_026963355.1 (24539 bp) chr NW_026963356.1 (34117 bp) chr NW_026963357.1 (666514 bp) chr NW_026963358.1 (27938 bp) chr NW_026963359.1 (23142 bp) chr NW_026963360.1 (21876 bp) chr NW_026963361.1 (21893 bp) chr NW_026963362.1 (29136 bp) chr NW_026963363.1 (419011 bp) chr NW_026963364.1 (60149 bp) chr NW_026963365.1 (61440 bp) chr NW_026963366.1 (26902 bp) chr NW_026963367.1 (51097 bp) chr NW_026963368.1 (77113 bp) chr NW_026963369.1 (121069 bp) chr NW_026963370.1 (866335 bp) chr NW_026963371.1 (332943 bp) chr NW_026963372.1 (501245 bp) chr NW_026963373.1 (41944 bp) chr NW_026963374.1 (73985 bp) chr NW_026963375.1 (53741 bp) chr NW_026963376.1 (53927 bp) chr NW_026963377.1 (15328 bp) chr NW_026963378.1 (612846 bp) chr NW_026963379.1 (30276 bp) chr NW_026963380.1 (20427 bp) chr NW_026963381.1 (25540 bp) chr NW_026963382.1 (58265 bp) chr NW_026963383.1 (25711 bp) chr NW_026963384.1 (18896 bp) chr NW_026963385.1 (34901 bp) chr NW_026963386.1 (25234 bp) chr NW_026963387.1 (66105 bp) chr NW_026963388.1 (30312 bp) chr NW_026963389.1 (32428 bp) chr NW_026963390.1 (25381 bp) chr NW_026963391.1 (26017 bp) chr NW_026963392.1 (25685 bp) chr NW_026963393.1 (19274 bp) chr NW_026963394.1 (27950 bp) chr NW_026963395.1 (45255 bp) chr NW_026963396.1 (63704 bp) chr NW_026963397.1 (22806 bp) chr NW_026963398.1 (24645 bp) chr NW_026963399.1 (50812 bp) chr NW_026963400.1 (70378 bp) chr NW_026963401.1 (21165 bp) chr NW_026963402.1 (95337 bp) chr NW_026963403.1 (32744 bp) chr NW_026963404.1 (32390 bp) chr NW_026963405.1 (20760 bp) chr NW_026963406.1 (17091 bp) chr NW_026963407.1 (25441 bp) chr NW_026963408.1 (32110 bp) chr NW_026963409.1 (25245 bp) chr NW_026963410.1 (26685 bp) chr NW_026963411.1 (26243 bp) chr NW_026963412.1 (23891 bp) chr NW_026963413.1 (32257 bp) chr NW_026963414.1 (35770 bp) chr NW_026963415.1 (28815 bp) chr NW_026963416.1 (33904 bp) chr NW_026963417.1 (59749 bp) chr NW_026963418.1 (81418 bp) chr NW_026963419.1 (107657 bp) chr NW_026963420.1 (30761 bp) chr NW_026963421.1 (23947 bp) chr NW_026963422.1 (18164 bp) chr NW_026963423.1 (25693 bp) chr NW_026963424.1 (91214 bp) chr NW_026963425.1 (28588 bp) chr NW_026963426.1 (22706 bp) chr NW_026963427.1 (31282 bp) chr NW_026963428.1 (29918 bp) chr NW_026963429.1 (18537 bp) chr NW_026963430.1 (19656 bp) chr NW_026963431.1 (24459 bp) chr NW_026963432.1 (22327 bp) chr NW_026963433.1 (105369 bp) chr NW_026963434.1 (26908 bp) chr NW_026963435.1 (28497 bp) chr NW_026963436.1 (36282 bp) chr NW_026963437.1 (23739 bp) chr NW_026963438.1 (24630 bp) chr NW_026963439.1 (34452 bp) chr NW_026963440.1 (33196 bp) chr NW_026963441.1 (21370 bp) chr NW_026963442.1 (20837 bp) chr NW_026963443.1 (56464 bp) chr NW_026963444.1 (22596 bp) chr NW_026963445.1 (89992 bp) chr NW_026963446.1 (20471 bp) chr NW_026963447.1 (25005 bp) chr NW_026963448.1 (22800 bp) chr NW_026963449.1 (48946 bp) chr NW_026963450.1 (23621 bp) chr NW_026963451.1 (69983 bp) chr NW_026963452.1 (26246 bp) chr NW_026963453.1 (73232 bp) chr NW_026963454.1 (23625 bp) chr NW_026963455.1 (21431 bp) chr NW_026963456.1 (20408 bp) chr NW_026963457.1 (23150 bp) chr NW_026963458.1 (20814 bp) chr NW_026963459.1 (33799 bp) chr NW_026963460.1 (22951 bp) chr NW_026963461.1 (39207 bp) chr NW_026963462.1 (16320 bp) chr NW_026963463.1 (19723 bp) chr NW_026963464.1 (19884 bp) chr NW_026963465.1 (17047 bp) chr NW_026963466.1 (28987 bp) chr NW_026963467.1 (26703 bp) chr NW_026963468.1 (27006 bp) chr NW_026963469.1 (21377 bp) chr NW_026963470.1 (31960 bp) chr NW_026963471.1 (89899 bp) chr NW_026963472.1 (52362 bp) chr NW_026963473.1 (46928 bp) chr NW_026963474.1 (24695 bp) chr NW_026963475.1 (38188 bp) chr NW_026963476.1 (22631 bp) chr NW_026963477.1 (17795 bp) chr NW_026963478.1 (20901 bp) chr NW_026963479.1 (26325 bp) chr NW_026963480.1 (22825 bp) chr NW_026963481.1 (23040 bp) chr NW_026963482.1 (21352 bp) chr NW_026963483.1 (19517 bp) chr NW_026963484.1 (43699 bp) chr NW_026963485.1 (14016 bp) chr NW_026963486.1 (13954 bp) chr NW_026963487.1 (25855 bp) chr NW_026963488.1 (21550 bp) chr NW_026963489.1 (33800 bp) chr NW_026963490.1 (20306 bp) chr NW_026963491.1 (32733 bp) chr NW_026963492.1 (41996 bp) chr NW_026963493.1 (27834 bp) chr NW_026963494.1 (23165 bp) chr NW_026963495.1 (21648 bp) chr NW_026963496.1 (27514 bp) chr NW_026963497.1 (22988 bp) chr NW_026963498.1 (27759 bp) chr NW_026963499.1 (31922 bp) chr NW_026963500.1 (55274 bp) chr NW_026963501.1 (19548 bp) chr NW_026963502.1 (19545 bp) chr NW_026963503.1 (31769 bp) chr NW_026963504.1 (20921 bp) chr NW_026963505.1 (26440 bp) chr NW_026963506.1 (36130 bp) chr NW_026963507.1 (50233 bp) chr NW_026963508.1 (37121 bp) chr NW_026963509.1 (15802 bp) chr NW_026963510.1 (21446 bp) chr NW_026963511.1 (16917 bp) chr NW_026963512.1 (24391 bp) chr NW_026963513.1 (19462 bp) chr NW_026963514.1 (24066 bp) chr NW_026963515.1 (17459 bp) chr NW_026963516.1 (18652 bp) chr NW_026963517.1 (8618 bp) chr NW_026963518.1 (20873 bp) chr NW_026963519.1 (32632 bp) chr NW_026963520.1 (36645 bp) chr NW_026963521.1 (23952 bp) chr NW_026963522.1 (22556 bp) chr NW_026963523.1 (15718 bp) chr NW_026963524.1 (50340 bp) chr NW_026963525.1 (23212 bp) chr NW_026963526.1 (18080 bp) chr NW_026963527.1 (24976 bp) chr NW_026963528.1 (20932 bp) chr NW_026963529.1 (20070 bp) chr NW_026963530.1 (43040 bp) chr NW_026963531.1 (22373 bp) chr NW_026963532.1 (21610 bp) chr NW_026963533.1 (25225 bp) chr NW_026963534.1 (22597 bp) chr NW_026963535.1 (18239 bp) chr NW_026963536.1 (19511 bp) chr NW_026963537.1 (25744 bp) chr NW_026963538.1 (33248 bp) chr NW_026963539.1 (16194 bp) chr NW_026963540.1 (29982 bp) chr NW_026963541.1 (38121 bp) chr NW_026963542.1 (23886 bp) chr NW_026963543.1 (22120 bp) chr NW_026963544.1 (40706 bp) chr NW_026963545.1 (22511 bp) chr NW_026963546.1 (29792 bp) chr NW_026963547.1 (15422 bp) chr NW_026963548.1 (28602 bp) chr NW_026963549.1 (29363 bp) chr NW_026963550.1 (42899 bp) chr NW_026963551.1 (28569 bp) chr NW_026963552.1 (47249 bp) chr NW_026963553.1 (40295 bp) chr NW_026963554.1 (23298 bp) chr NW_026963555.1 (17778 bp) chr NW_026963556.1 (40663 bp) chr NW_026963557.1 (19240 bp) chr NW_026963558.1 (53464 bp) chr NW_026963559.1 (20496 bp) chr NW_026963560.1 (18775 bp) chr NW_026963561.1 (22720 bp) chr NW_026963562.1 (29987 bp) chr NW_026963563.1 (17061 bp) chr NW_026963564.1 (19136 bp) chr NW_026963565.1 (18594 bp) chr NW_026963566.1 (21889 bp) chr NW_026963567.1 (42002 bp) chr NW_026963568.1 (28438 bp) chr NW_026963569.1 (27574 bp) chr NW_026963570.1 (26209 bp) chr NW_026963571.1 (32307 bp) chr NW_026963572.1 (23566 bp) chr NW_026963573.1 (20539 bp) chr NW_026963574.1 (19425 bp) chr NW_026963575.1 (32111 bp) chr NW_026963576.1 (34506 bp) chr NW_026963577.1 (20176 bp) chr NW_026963578.1 (24377 bp) chr NW_026963579.1 (55969 bp) chr NW_026963580.1 (27671 bp) chr NW_026963581.1 (24138 bp) chr NW_026963582.1 (97536 bp) chr NW_026963583.1 (63607 bp) chr NW_026963584.1 (34460 bp) chr NW_026963585.1 (49376 bp) chr NW_026963586.1 (27685 bp) chr NW_026963587.1 (24514 bp) chr NW_026963588.1 (48354 bp) chr NW_026963589.1 (26316 bp) chr NW_026963590.1 (22686 bp) chr NW_026963591.1 (23266 bp) chr NW_026963592.1 (19131 bp) chr NW_026963593.1 (17046 bp) chr NW_026963594.1 (23204 bp) chr NW_026963595.1 (23624 bp) chr NW_026963596.1 (19410 bp) chr NW_026963597.1 (4560 bp) chr NW_026963598.1 (29441 bp) chr NW_026963599.1 (40152 bp) chr NW_026963600.1 (21122 bp) chr NW_026963601.1 (36140 bp) chr NW_026963602.1 (18515 bp) chr NW_026963603.1 (20142 bp) chr NW_026963604.1 (25383 bp) chr NW_026963605.1 (28494 bp) chr NW_026963606.1 (18177 bp) chr NW_026963607.1 (18627 bp) chr NW_026963608.1 (22139 bp) chr NW_026963609.1 (25457 bp) chr NW_026963610.1 (20696 bp) chr NW_026963611.1 (20121 bp) chr NW_026963612.1 (23855 bp) chr NW_026963613.1 (19683 bp) chr NW_026963614.1 (17735 bp) chr NW_026963615.1 (24639 bp) chr NW_026963616.1 (36520 bp) chr NW_026963617.1 (29370 bp) chr NW_026963618.1 (25732 bp) chr NW_026963619.1 (23735 bp) chr NW_026963620.1 (21397 bp) chr NW_026963621.1 (21572 bp) chr NW_026963622.1 (25321 bp) chr NW_026963623.1 (18363 bp) chr NW_026963624.1 (20416 bp) chr NW_026963625.1 (20064 bp) chr NW_026963626.1 (37124 bp) chr NW_026963627.1 (23433 bp) chr NW_026963628.1 (24267 bp) chr NW_026963629.1 (25181 bp) chr NW_026963630.1 (20211 bp) chr NW_026963631.1 (26376 bp) chr NW_026963632.1 (20626 bp) chr NW_026963633.1 (32619 bp) chr NW_026963634.1 (21163 bp) chr NW_026963635.1 (18606 bp) chr NW_026963636.1 (18842 bp) chr NW_026963637.1 (25787 bp) chr NW_026963638.1 (21305 bp) chr NW_026963639.1 (24239 bp) chr NW_026963640.1 (24465 bp) chr NW_026963641.1 (26936 bp) chr NW_026963642.1 (22173 bp) chr NW_026963643.1 (33930 bp) chr NW_026963644.1 (30601 bp) chr NW_026963645.1 (27131 bp) chr NW_026963646.1 (21725 bp) chr NW_026963647.1 (17559 bp) chr NW_026963648.1 (26423 bp) chr NW_026963649.1 (23991 bp) chr NW_026963650.1 (21075 bp) chr NW_026963651.1 (37035 bp) chr NW_026963652.1 (20328 bp) chr NW_026963653.1 (17920 bp) chr NW_026963654.1 (25257 bp) chr NW_026963655.1 (21611 bp) chr NW_026963656.1 (31880 bp) chr NW_026963657.1 (17971 bp) chr NW_026963658.1 (17181 bp) chr NW_026963659.1 (21841 bp) chr NW_026963660.1 (48676 bp) chr NW_026963661.1 (19775 bp) chr NW_026963662.1 (35568 bp) chr NW_026963663.1 (21947 bp) chr NW_026963664.1 (24250 bp) chr NW_026963665.1 (21491 bp) chr NW_026963666.1 (22260 bp) chr NW_026963667.1 (28403 bp) chr NW_026963668.1 (19543 bp) chr NW_026963669.1 (59060 bp) chr NW_026963670.1 (23088 bp) chr NW_026963671.1 (25210 bp) chr NW_026963672.1 (29503 bp) chr NW_026963673.1 (26257 bp) chr NW_026963674.1 (22982 bp) chr NW_026963675.1 (20127 bp) chr NW_026963676.1 (21567 bp) chr NW_026963677.1 (25240 bp) chr NW_026963678.1 (25959 bp) chr NW_026963679.1 (23464 bp) chr NW_026963680.1 (23133 bp) chr NW_026963681.1 (22873 bp) chr NW_026963682.1 (27482 bp) chr NW_026963683.1 (23835 bp) chr NW_026963684.1 (18595 bp) chr NW_026963685.1 (25677 bp) chr NW_026963686.1 (25352 bp) chr NW_026963687.1 (26654 bp) chr NW_026963688.1 (16682 bp) chr NW_026963689.1 (43634 bp) chr NW_026963690.1 (20473 bp) chr NW_026963691.1 (24782 bp) chr NW_026963692.1 (27429 bp) chr NW_026963693.1 (22023 bp) chr NW_026963694.1 (22432 bp) chr NW_026963695.1 (27801 bp) chr NW_026963696.1 (89040 bp) chr NW_026963697.1 (29127 bp) chr NW_026963698.1 (22758 bp) chr NW_026963699.1 (21265 bp) chr NW_026963700.1 (32610 bp) chr NW_026963701.1 (40879 bp) chr NW_026963702.1 (25242 bp) chr NW_026963703.1 (27008 bp) chr NW_026963704.1 (21375 bp) chr NW_026963705.1 (33180 bp) chr NW_026963706.1 (26193 bp) chr NW_026963707.1 (21669 bp) chr NW_026963708.1 (25618 bp) chr NW_026963709.1 (25056 bp) chr NW_026963710.1 (22608 bp) chr NW_026963711.1 (23115 bp) chr NW_026963712.1 (22043 bp) chr NW_026963713.1 (25891 bp) chr NW_026963714.1 (24871 bp) chr NW_026963715.1 (22811 bp) chr NW_026963716.1 (38945 bp) chr NW_026963717.1 (35514 bp) chr NW_026963718.1 (21356 bp) chr NW_026963719.1 (28341 bp) chr NW_026963720.1 (20602 bp) chr NW_026963721.1 (20995 bp) chr NW_026963722.1 (21623 bp) chr NW_026963723.1 (22869 bp) chr NW_026963724.1 (22118 bp) chr NW_026963725.1 (27787 bp) chr NW_026963726.1 (28118 bp) chr NW_026963727.1 (22374 bp) chr NW_026963728.1 (26688 bp) chr NW_026963729.1 (18680 bp) chr NW_026963730.1 (26877 bp) chr NW_026963731.1 (22152 bp) chr NW_026963732.1 (21122 bp) chr NW_026963733.1 (30669 bp) chr NW_026963734.1 (21233 bp) chr NW_026963735.1 (20919 bp) chr NW_026963736.1 (26026 bp) chr NW_026963737.1 (15473 bp) chr NW_026963738.1 (23824 bp) chr NW_026963739.1 (19804 bp) chr NW_026963740.1 (17713 bp) chr NW_026963741.1 (20707 bp) chr NW_026963742.1 (18963 bp) chr NW_026963743.1 (21370 bp) chr NW_026963744.1 (22821 bp) chr NW_026963745.1 (20669 bp) chr NW_026963746.1 (25286 bp) chr NW_026963747.1 (21276 bp) chr NW_026963748.1 (22489 bp) chr NW_026963749.1 (18369 bp) chr NW_026963750.1 (22802 bp) chr NW_026963751.1 (24575 bp) chr NW_026963752.1 (23655 bp) chr NW_026963753.1 (26162 bp) chr NW_026963754.1 (23060 bp) chr NW_026963755.1 (23954 bp) chr NW_026963756.1 (21792 bp) chr NW_026963757.1 (32711 bp) chr NW_026963758.1 (26150 bp) chr NW_026963759.1 (24511 bp) chr NW_026963760.1 (21863 bp) chr NW_026963761.1 (29603 bp) chr NW_026963762.1 (14940 bp) chr NW_026963763.1 (20415 bp) chr NW_026963764.1 (28644 bp) chr NW_026963765.1 (26859 bp) chr NW_026963766.1 (21572 bp) chr NW_026963767.1 (11867 bp) chr NW_026963768.1 (22422 bp) chr NW_026963769.1 (19132 bp) chr NW_026963770.1 (17338 bp) chr NW_026963771.1 (24159 bp) chr NW_026963772.1 (22295 bp) chr NW_026963773.1 (15046 bp) chr NW_026963774.1 (18598 bp) chr NW_026963775.1 (22167 bp) chr NW_026963776.1 (16973 bp) chr NW_026963777.1 (18602 bp) chr NW_026963778.1 (24241 bp) chr NW_026963779.1 (27924 bp) chr NW_026963780.1 (25424 bp) chr NW_026963781.1 (28413 bp) chr NW_026963782.1 (20838 bp) chr NW_026963783.1 (22467 bp) chr NW_026963784.1 (25012 bp) chr NW_026963785.1 (13181 bp) chr NW_026963786.1 (18105 bp) chr NW_026963787.1 (18769 bp) chr NW_026963788.1 (21775 bp) chr NW_026963789.1 (26327 bp) chr NW_026963790.1 (14514 bp) chr NW_026963791.1 (20050 bp) chr NW_026963792.1 (18784 bp) chr NW_026963793.1 (20749 bp) chr NW_026963794.1 (13251 bp) chr NW_026963795.1 (20766 bp) chr NW_026963796.1 (23492 bp) chr NW_026963797.1 (20235 bp) chr NW_026963798.1 (13457 bp) chr NW_026963799.1 (17957 bp) chr NW_026963800.1 (22384 bp) chr NW_026963801.1 (31865 bp) chr NW_026963802.1 (24022 bp) chr NW_026963803.1 (26219 bp) chr NW_026963804.1 (24043 bp) chr NW_026963805.1 (28961 bp) chr NW_026963806.1 (14045 bp) chr NW_026963807.1 (15082 bp) chr NW_026963808.1 (24314 bp) chr NW_026963809.1 (20441 bp) chr NW_026963810.1 (10923 bp) chr NW_026963811.1 (26407 bp) chr NW_026963812.1 (14166 bp) chr NW_026963813.1 (10138 bp) chr NW_026963814.1 (8703 bp) chr NW_026963815.1 (16400 bp) chr NC_007687.1 (18652 bp) Stored sequence information of 541 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== Adding context-specific methylation summaries >>> Writing genome-wide cytosine report to: /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M.CpG_report.txt <<< >>> Writing all cytosine context summary file to: /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/25-meth-extract/93M.cytosine_context_summary.txt <<< Storing all covered cytosine positions for chromosome: NC_007687.1 Writing cytosine report for chromosome NC_007687.1 (stored 414 different covered positions) Writing cytosine report for chromosome NC_086373.1 (stored 2812782 different covered positions) Writing cytosine report for chromosome NC_086374.1 (stored 2766520 different covered positions) Writing cytosine report for chromosome NC_086375.1 (stored 2233200 different covered positions) Writing cytosine report for chromosome NC_086376.1 (stored 2441416 different covered positions) Writing cytosine report for chromosome NC_086377.1 (stored 2005015 different covered positions) Writing cytosine report for chromosome NC_086378.1 (stored 2137309 different covered positions) Writing cytosine report for chromosome NC_086379.1 (stored 2077521 different covered positions) Writing cytosine report for chromosome NC_086380.1 (stored 1730750 different covered positions) Writing cytosine report for chromosome NC_086381.1 (stored 1871764 different covered positions) Writing cytosine report for chromosome NC_086382.1 (stored 1833670 different covered positions) Writing cytosine report for chromosome NC_086383.1 (stored 1590266 different covered positions) Writing cytosine report for chromosome NC_086384.1 (stored 1481492 different covered positions) Writing cytosine report for chromosome NC_086385.1 (stored 1347863 different covered positions)