Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: output/25-meth-extract/93M_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/< Genome directory: >/home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/22-genome-prep/< Coverage threshold 0 (all positions will be reported, default) CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /home/shared/16TB_HDD_01/sr320/github/project-mytilus-methylation/output/22-genome-prep/ chr NC_086373.1 (113486924 bp) chr NC_086374.1 (103707636 bp) chr NC_086375.1 (94312406 bp) chr NC_086376.1 (96324366 bp) chr NC_086377.1 (88129055 bp) chr NC_086378.1 (91445414 bp) chr NC_086379.1 (85406108 bp) chr NC_086380.1 (80675551 bp) chr NC_086381.1 (82295107 bp) chr NC_086382.1 (78455819 bp) chr NC_086383.1 (71253669 bp) chr NC_086384.1 (60198110 bp) chr NC_086385.1 (63222996 bp) chr NC_086386.1 (81773519 bp) chr NW_026963290.1 (8139973 bp) chr NW_026963291.1 (22515 bp) chr NW_026963292.1 (5553665 bp) chr NW_026963293.1 (500000 bp) chr NW_026963294.1 (5965364 bp) chr NW_026963295.1 (6074899 bp) chr NW_026963296.1 (3628579 bp) chr NW_026963297.1 (3444836 bp) chr NW_026963298.1 (2989614 bp) chr NW_026963299.1 (250000 bp) chr NW_026963300.1 (356632 bp) chr NW_026963301.1 (4334515 bp) chr NW_026963302.1 (4076163 bp) chr NW_026963303.1 (250000 bp) chr NW_026963304.1 (4603332 bp) chr NW_026963305.1 (1250000 bp) chr NW_026963306.1 (121029 bp) chr NW_026963307.1 (125000 bp) chr NW_026963308.1 (418548 bp) chr NW_026963309.1 (710015 bp) chr NW_026963310.1 (3670610 bp) chr NW_026963311.1 (1420456 bp) chr NW_026963312.1 (1013396 bp) chr NW_026963313.1 (825963 bp) chr NW_026963314.1 (2737876 bp) chr NW_026963315.1 (4066460 bp) chr NW_026963316.1 (450949 bp) chr NW_026963317.1 (4467411 bp) chr NW_026963318.1 (3454087 bp) chr NW_026963319.1 (250000 bp) chr NW_026963320.1 (175774 bp) chr NW_026963321.1 (741490 bp) chr NW_026963322.1 (899002 bp) chr NW_026963323.1 (961498 bp) chr NW_026963324.1 (293216 bp) chr NW_026963325.1 (26743 bp) chr NW_026963326.1 (30845 bp) chr NW_026963327.1 (35643 bp) chr NW_026963328.1 (31473 bp) chr NW_026963329.1 (267817 bp) chr NW_026963330.1 (38397 bp) chr NW_026963331.1 (73781 bp) chr NW_026963332.1 (1260917 bp) chr NW_026963333.1 (250000 bp) chr NW_026963334.1 (25388 bp) chr NW_026963335.1 (565390 bp) chr NW_026963336.1 (26109 bp) chr NW_026963337.1 (659095 bp) chr NW_026963338.1 (357655 bp) chr NW_026963339.1 (277346 bp) chr NW_026963340.1 (4220937 bp) chr NW_026963341.1 (122847 bp) chr NW_026963342.1 (58283 bp) chr NW_026963343.1 (556242 bp) chr NW_026963344.1 (203489 bp) chr NW_026963345.1 (224476 bp) chr NW_026963346.1 (651063 bp) chr NW_026963347.1 (1227606 bp) chr NW_026963348.1 (21803 bp) chr NW_026963349.1 (40271 bp) chr NW_026963350.1 (1415666 bp) chr NW_026963351.1 (17622 bp) chr NW_026963352.1 (337009 bp) chr NW_026963353.1 (20381 bp) chr NW_026963354.1 (394918 bp) chr NW_026963355.1 (24539 bp) chr NW_026963356.1 (34117 bp) chr NW_026963357.1 (666514 bp) chr NW_026963358.1 (27938 bp) chr NW_026963359.1 (23142 bp) chr NW_026963360.1 (21876 bp) chr NW_026963361.1 (21893 bp) chr NW_026963362.1 (29136 bp) chr NW_026963363.1 (419011 bp) chr NW_026963364.1 (60149 bp) chr NW_026963365.1 (61440 bp) chr NW_026963366.1 (26902 bp) chr NW_026963367.1 (51097 bp) chr NW_026963368.1 (77113 bp) chr NW_026963369.1 (121069 bp) chr NW_026963370.1 (866335 bp) chr NW_026963371.1 (332943 bp) chr NW_026963372.1 (501245 bp) chr NW_026963373.1 (41944 bp) chr NW_026963374.1 (73985 bp) chr NW_026963375.1 (53741 bp) chr NW_026963376.1 (53927 bp) chr NW_026963377.1 (15328 bp) chr NW_026963378.1 (612846 bp) chr NW_026963379.1 (30276 bp) chr NW_026963380.1 (20427 bp) chr NW_026963381.1 (25540 bp) chr NW_026963382.1 (58265 bp) chr NW_026963383.1 (25711 bp) chr NW_026963384.1 (18896 bp) chr NW_026963385.1 (34901 bp) chr NW_026963386.1 (25234 bp) chr NW_026963387.1 (66105 bp) chr NW_026963388.1 (30312 bp) chr NW_026963389.1 (32428 bp) chr NW_026963390.1 (25381 bp) chr NW_026963391.1 (26017 bp) chr NW_026963392.1 (25685 bp) chr NW_026963393.1 (19274 bp) chr NW_026963394.1 (27950 bp) chr NW_026963395.1 (45255 bp) chr NW_026963396.1 (63704 bp) chr NW_026963397.1 (22806 bp) chr NW_026963398.1 (24645 bp) chr NW_026963399.1 (50812 bp) chr NW_026963400.1 (70378 bp) chr NW_026963401.1 (21165 bp) chr NW_026963402.1 (95337 bp) chr NW_026963403.1 (32744 bp) chr NW_026963404.1 (32390 bp) chr NW_026963405.1 (20760 bp) chr NW_026963406.1 (17091 bp) chr NW_026963407.1 (25441 bp) chr NW_026963408.1 (32110 bp) chr NW_026963409.1 (25245 bp) chr NW_026963410.1 (26685 bp) chr NW_026963411.1 (26243 bp) chr NW_026963412.1 (23891 bp) chr NW_026963413.1 (32257 bp) chr NW_026963414.1 (35770 bp) chr NW_026963415.1 (28815 bp) chr NW_026963416.1 (33904 bp) chr NW_026963417.1 (59749 bp) chr NW_026963418.1 (81418 bp) chr NW_026963419.1 (107657 bp) chr NW_026963420.1 (30761 bp) chr NW_026963421.1 (23947 bp) chr NW_026963422.1 (18164 bp) chr NW_026963423.1 (25693 bp) chr NW_026963424.1 (91214 bp) chr NW_026963425.1 (28588 bp) chr NW_026963426.1 (22706 bp) chr NW_026963427.1 (31282 bp) chr NW_026963428.1 (29918 bp) chr NW_026963429.1 (18537 bp) chr NW_026963430.1 (19656 bp) chr NW_026963431.1 (24459 bp) chr NW_026963432.1 (22327 bp) chr NW_026963433.1 (105369 bp) chr NW_026963434.1 (26908 bp) chr NW_026963435.1 (28497 bp) chr NW_026963436.1 (36282 bp) chr NW_026963437.1 (23739 bp) chr NW_026963438.1 (24630 bp) chr NW_026963439.1 (34452 bp) chr NW_026963440.1 (33196 bp) chr NW_026963441.1 (21370 bp) chr NW_026963442.1 (20837 bp) chr NW_026963443.1 (56464 bp) chr NW_026963444.1 (22596 bp) chr NW_026963445.1 (89992 bp) chr NW_026963446.1 (20471 bp) chr NW_026963447.1 (25005 bp) chr NW_026963448.1 (22800 bp) chr NW_026963449.1 (48946 bp) chr NW_026963450.1 (23621 bp) chr NW_026963451.1 (69983 bp) chr NW_026963452.1 (26246 bp) chr NW_026963453.1 (73232 bp) chr NW_026963454.1 (23625 bp) chr NW_026963455.1 (21431 bp) chr NW_026963456.1 (20408 bp) chr NW_026963457.1 (23150 bp) chr NW_026963458.1 (20814 bp) chr NW_026963459.1 (33799 bp) chr NW_026963460.1 (22951 bp) chr NW_026963461.1 (39207 bp) chr NW_026963462.1 (16320 bp) chr NW_026963463.1 (19723 bp) chr NW_026963464.1 (19884 bp) chr NW_026963465.1 (17047 bp) chr NW_026963466.1 (28987 bp) chr NW_026963467.1 (26703 bp) chr NW_026963468.1 (27006 bp) chr NW_026963469.1 (21377 bp) chr NW_026963470.1 (31960 bp) chr NW_026963471.1 (89899 bp) chr NW_026963472.1 (52362 bp) chr NW_026963473.1 (46928 bp) chr NW_026963474.1 (24695 bp) chr NW_026963475.1 (38188 bp) chr NW_026963476.1 (22631 bp) chr NW_026963477.1 (17795 bp) chr NW_026963478.1 (20901 bp) chr NW_026963479.1 (26325 bp) chr NW_026963480.1 (22825 bp) chr NW_026963481.1 (23040 bp) chr NW_026963482.1 (21352 bp) chr NW_026963483.1 (19517 bp) chr NW_026963484.1 (43699 bp) chr NW_026963485.1 (14016 bp) chr NW_026963486.1 (13954 bp) chr NW_026963487.1 (25855 bp) chr NW_026963488.1 (21550 bp) chr NW_026963489.1 (33800 bp) chr NW_026963490.1 (20306 bp) chr NW_026963491.1 (32733 bp) chr NW_026963492.1 (41996 bp) chr NW_026963493.1 (27834 bp) chr NW_026963494.1 (23165 bp) chr NW_026963495.1 (21648 bp) chr NW_026963496.1 (27514 bp) chr NW_026963497.1 (22988 bp) chr NW_026963498.1 (27759 bp) chr NW_026963499.1 (31922 bp) chr NW_026963500.1 (55274 bp) chr NW_026963501.1 (19548 bp) chr NW_026963502.1 (19545 bp) chr NW_026963503.1 (31769 bp) chr NW_026963504.1 (20921 bp) chr NW_026963505.1 (26440 bp) chr NW_026963506.1 (36130 bp) chr NW_026963507.1 (50233 bp) chr NW_026963508.1 (37121 bp) chr NW_026963509.1 (15802 bp) chr NW_026963510.1 (21446 bp) chr NW_026963511.1 (16917 bp) chr NW_026963512.1 (24391 bp) chr NW_026963513.1 (19462 bp) chr NW_026963514.1 (24066 bp) chr NW_026963515.1 (17459 bp) chr NW_026963516.1 (18652 bp) chr NW_026963517.1 (8618 bp) chr NW_026963518.1 (20873 bp) chr NW_026963519.1 (32632 bp) chr NW_026963520.1 (36645 bp) chr NW_026963521.1 (23952 bp) chr NW_026963522.1 (22556 bp) chr NW_026963523.1 (15718 bp) chr NW_026963524.1 (50340 bp) chr NW_026963525.1 (23212 bp) chr NW_026963526.1 (18080 bp) chr NW_026963527.1 (24976 bp) chr NW_026963528.1 (20932 bp) chr NW_026963529.1 (20070 bp) chr NW_026963530.1 (43040 bp) chr NW_026963531.1 (22373 bp) chr NW_026963532.1 (21610 bp) chr NW_026963533.1 (25225 bp) chr NW_026963534.1 (22597 bp) chr NW_026963535.1 (18239 bp) chr NW_026963536.1 (19511 bp) chr NW_026963537.1 (25744 bp) chr NW_026963538.1 (33248 bp) chr NW_026963539.1 (16194 bp) chr NW_026963540.1 (29982 bp) chr NW_026963541.1 (38121 bp) chr NW_026963542.1 (23886 bp) chr NW_026963543.1 (22120 bp) chr NW_026963544.1 (40706 bp) chr NW_026963545.1 (22511 bp) chr NW_026963546.1 (29792 bp) chr NW_026963547.1 (15422 bp) chr NW_026963548.1 (28602 bp) chr NW_026963549.1 (29363 bp) chr NW_026963550.1 (42899 bp) chr NW_026963551.1 (28569 bp) chr NW_026963552.1 (47249 bp) chr NW_026963553.1 (40295 bp) chr NW_026963554.1 (23298 bp) chr NW_026963555.1 (17778 bp) chr NW_026963556.1 (40663 bp) chr NW_026963557.1 (19240 bp) chr NW_026963558.1 (53464 bp) chr NW_026963559.1 (20496 bp) chr NW_026963560.1 (18775 bp) chr NW_026963561.1 (22720 bp) chr NW_026963562.1 (29987 bp) chr NW_026963563.1 (17061 bp) chr NW_026963564.1 (19136 bp) chr NW_026963565.1 (18594 bp) chr NW_026963566.1 (21889 bp) chr NW_026963567.1 (42002 bp) chr NW_026963568.1 (28438 bp) chr NW_026963569.1 (27574 bp) chr NW_026963570.1 (26209 bp) chr NW_026963571.1 (32307 bp) chr NW_026963572.1 (23566 bp) chr NW_026963573.1 (20539 bp) chr NW_026963574.1 (19425 bp) chr NW_026963575.1 (32111 bp) chr NW_026963576.1 (34506 bp) chr NW_026963577.1 (20176 bp) chr NW_026963578.1 (24377 bp) chr NW_026963579.1 (55969 bp) chr NW_026963580.1 (27671 bp) chr NW_026963581.1 (24138 bp) chr NW_026963582.1 (97536 bp) chr NW_026963583.1 (63607 bp) chr NW_026963584.1 (34460 bp) chr NW_026963585.1 (49376 bp) chr NW_026963586.1 (27685 bp) chr NW_026963587.1 (24514 bp) chr NW_026963588.1 (48354 bp) chr NW_026963589.1 (26316 bp) chr NW_026963590.1 (22686 bp) chr NW_026963591.1 (23266 bp) chr NW_026963592.1 (19131 bp) chr NW_026963593.1 (17046 bp) chr NW_026963594.1 (23204 bp) chr NW_026963595.1 (23624 bp) chr NW_026963596.1 (19410 bp) chr NW_026963597.1 (4560 bp) chr NW_026963598.1 (29441 bp) chr NW_026963599.1 (40152 bp) chr NW_026963600.1 (21122 bp) chr NW_026963601.1 (36140 bp) chr NW_026963602.1 (18515 bp) chr NW_026963603.1 (20142 bp) chr NW_026963604.1 (25383 bp) chr NW_026963605.1 (28494 bp) chr NW_026963606.1 (18177 bp) chr NW_026963607.1 (18627 bp) chr NW_026963608.1 (22139 bp) chr NW_026963609.1 (25457 bp) chr NW_026963610.1 (20696 bp) chr NW_026963611.1 (20121 bp) chr NW_026963612.1 (23855 bp) chr NW_026963613.1 (19683 bp) chr NW_026963614.1 (17735 bp) chr NW_026963615.1 (24639 bp) chr NW_026963616.1 (36520 bp) chr NW_026963617.1 (29370 bp) chr NW_026963618.1 (25732 bp) chr NW_026963619.1 (23735 bp) chr NW_026963620.1 (21397 bp) chr NW_026963621.1 (21572 bp) chr NW_026963622.1 (25321 bp) chr NW_026963623.1 (18363 bp) chr NW_026963624.1 (20416 bp) chr NW_026963625.1 (20064 bp) chr NW_026963626.1 (37124 bp) chr NW_026963627.1 (23433 bp) chr NW_026963628.1 (24267 bp) chr NW_026963629.1 (25181 bp) chr NW_026963630.1 (20211 bp) chr NW_026963631.1 (26376 bp) chr NW_026963632.1 (20626 bp) chr NW_026963633.1 (32619 bp) chr NW_026963634.1 (21163 bp) chr NW_026963635.1 (18606 bp) chr NW_026963636.1 (18842 bp) chr NW_026963637.1 (25787 bp) chr NW_026963638.1 (21305 bp) chr NW_026963639.1 (24239 bp) chr NW_026963640.1 (24465 bp) chr NW_026963641.1 (26936 bp) chr NW_026963642.1 (22173 bp) chr NW_026963643.1 (33930 bp) chr NW_026963644.1 (30601 bp) chr NW_026963645.1 (27131 bp) chr NW_026963646.1 (21725 bp) chr NW_026963647.1 (17559 bp) chr NW_026963648.1 (26423 bp) chr NW_026963649.1 (23991 bp) chr NW_026963650.1 (21075 bp) chr NW_026963651.1 (37035 bp) chr NW_026963652.1 (20328 bp) chr NW_026963653.1 (17920 bp) chr NW_026963654.1 (25257 bp) chr NW_026963655.1 (21611 bp) chr NW_026963656.1 (31880 bp) chr NW_026963657.1 (17971 bp) chr NW_026963658.1 (17181 bp) chr NW_026963659.1 (21841 bp) chr NW_026963660.1 (48676 bp) chr NW_026963661.1 (19775 bp) chr NW_026963662.1 (35568 bp) chr NW_026963663.1 (21947 bp) chr NW_026963664.1 (24250 bp) chr NW_026963665.1 (21491 bp) chr NW_026963666.1 (22260 bp) chr NW_026963667.1 (28403 bp) chr NW_026963668.1 (19543 bp) chr NW_026963669.1 (59060 bp) chr NW_026963670.1 (23088 bp) chr NW_026963671.1 (25210 bp) chr NW_026963672.1 (29503 bp) chr NW_026963673.1 (26257 bp) chr NW_026963674.1 (22982 bp) chr NW_026963675.1 (20127 bp) chr NW_026963676.1 (21567 bp) chr NW_026963677.1 (25240 bp) chr NW_026963678.1 (25959 bp) chr NW_026963679.1 (23464 bp) chr NW_026963680.1 (23133 bp) chr NW_026963681.1 (22873 bp) chr NW_026963682.1 (27482 bp) chr NW_026963683.1 (23835 bp) chr NW_026963684.1 (18595 bp) chr NW_026963685.1 (25677 bp) chr NW_026963686.1 (25352 bp) chr NW_026963687.1 (26654 bp) chr NW_026963688.1 (16682 bp) chr NW_026963689.1 (43634 bp) chr NW_026963690.1 (20473 bp) chr NW_026963691.1 (24782 bp) chr NW_026963692.1 (27429 bp) chr NW_026963693.1 (22023 bp) chr NW_026963694.1 (22432 bp) chr NW_026963695.1 (27801 bp) chr NW_026963696.1 (89040 bp) chr NW_026963697.1 (29127 bp) chr NW_026963698.1 (22758 bp) chr NW_026963699.1 (21265 bp) chr NW_026963700.1 (32610 bp) chr NW_026963701.1 (40879 bp) chr NW_026963702.1 (25242 bp) chr NW_026963703.1 (27008 bp) chr NW_026963704.1 (21375 bp) chr NW_026963705.1 (33180 bp) chr NW_026963706.1 (26193 bp) chr NW_026963707.1 (21669 bp) chr NW_026963708.1 (25618 bp) chr NW_026963709.1 (25056 bp) chr NW_026963710.1 (22608 bp) chr NW_026963711.1 (23115 bp) chr NW_026963712.1 (22043 bp) chr NW_026963713.1 (25891 bp) chr NW_026963714.1 (24871 bp) chr NW_026963715.1 (22811 bp) chr NW_026963716.1 (38945 bp) chr NW_026963717.1 (35514 bp) chr NW_026963718.1 (21356 bp) chr NW_026963719.1 (28341 bp) chr NW_026963720.1 (20602 bp) chr NW_026963721.1 (20995 bp) chr NW_026963722.1 (21623 bp) chr NW_026963723.1 (22869 bp) chr NW_026963724.1 (22118 bp) chr NW_026963725.1 (27787 bp) chr NW_026963726.1 (28118 bp) chr NW_026963727.1 (22374 bp) chr NW_026963728.1 (26688 bp) chr NW_026963729.1 (18680 bp) chr NW_026963730.1 (26877 bp) chr NW_026963731.1 (22152 bp) chr NW_026963732.1 (21122 bp) chr NW_026963733.1 (30669 bp) chr NW_026963734.1 (21233 bp) chr NW_026963735.1 (20919 bp) chr NW_026963736.1 (26026 bp) chr NW_026963737.1 (15473 bp) chr NW_026963738.1 (23824 bp) chr NW_026963739.1 (19804 bp) chr NW_026963740.1 (17713 bp) chr NW_026963741.1 (20707 bp) chr NW_026963742.1 (18963 bp) chr NW_026963743.1 (21370 bp) chr NW_026963744.1 (22821 bp) chr NW_026963745.1 (20669 bp) chr NW_026963746.1 (25286 bp) chr NW_026963747.1 (21276 bp) chr NW_026963748.1 (22489 bp) chr NW_026963749.1 (18369 bp) chr NW_026963750.1 (22802 bp) chr NW_026963751.1 (24575 bp) chr NW_026963752.1 (23655 bp) chr NW_026963753.1 (26162 bp) chr NW_026963754.1 (23060 bp) chr NW_026963755.1 (23954 bp) chr NW_026963756.1 (21792 bp) chr NW_026963757.1 (32711 bp) chr NW_026963758.1 (26150 bp) chr NW_026963759.1 (24511 bp) chr NW_026963760.1 (21863 bp) chr NW_026963761.1 (29603 bp) chr NW_026963762.1 (14940 bp) chr NW_026963763.1 (20415 bp) chr NW_026963764.1 (28644 bp) chr NW_026963765.1 (26859 bp) chr NW_026963766.1 (21572 bp) chr NW_026963767.1 (11867 bp) chr NW_026963768.1 (22422 bp) chr NW_026963769.1 (19132 bp) chr NW_026963770.1 (17338 bp) chr NW_026963771.1 (24159 bp) chr NW_026963772.1 (22295 bp) chr NW_026963773.1 (15046 bp) chr NW_026963774.1 (18598 bp) chr NW_026963775.1 (22167 bp) chr NW_026963776.1 (16973 bp) chr NW_026963777.1 (18602 bp) chr NW_026963778.1 (24241 bp) chr NW_026963779.1 (27924 bp) chr NW_026963780.1 (25424 bp) chr NW_026963781.1 (28413 bp) chr NW_026963782.1 (20838 bp) chr NW_026963783.1 (22467 bp) chr NW_026963784.1 (25012 bp) chr NW_026963785.1 (13181 bp) chr NW_026963786.1 (18105 bp) chr NW_026963787.1 (18769 bp) chr NW_026963788.1 (21775 bp) chr NW_026963789.1 (26327 bp) chr NW_026963790.1 (14514 bp) chr NW_026963791.1 (20050 bp) chr NW_026963792.1 (18784 bp) chr NW_026963793.1 (20749 bp) chr NW_026963794.1 (13251 bp) chr NW_026963795.1 (20766 bp) chr NW_026963796.1 (23492 bp) chr NW_026963797.1 (20235 bp) chr NW_026963798.1 (13457 bp) chr NW_026963799.1 (17957 bp) chr NW_026963800.1 (22384 bp) chr NW_026963801.1 (31865 bp) chr NW_026963802.1 (24022 bp) chr NW_026963803.1 (26219 bp) chr NW_026963804.1 (24043 bp) chr NW_026963805.1 (28961 bp) chr NW_026963806.1 (14045 bp) chr NW_026963807.1 (15082 bp) chr NW_026963808.1 (24314 bp) chr NW_026963809.1 (20441 bp) chr NW_026963810.1 (10923 bp) chr NW_026963811.1 (26407 bp) chr NW_026963812.1 (14166 bp) chr NW_026963813.1 (10138 bp) chr NW_026963814.1 (8703 bp) chr NW_026963815.1 (16400 bp) chr NC_007687.1 (18652 bp) Stored sequence information of 541 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== Adding context-specific methylation summaries >>> Writing genome-wide cytosine report to: output/25-meth-extract/93M.CpG_report.txt <<< >>> Writing all cytosine context summary file to: output/25-meth-extract/93M.cytosine_context_summary.txt <<< Storing all covered cytosine positions for chromosome: NC_007687.1 Writing cytosine report for chromosome NC_007687.1 (stored 414 different covered positions) Writing cytosine report for chromosome NC_086373.1 (stored 2812782 different covered positions) Writing cytosine report for chromosome NC_086374.1 (stored 2766520 different covered positions) Writing cytosine report for chromosome NC_086375.1 (stored 2233200 different covered positions) Writing cytosine report for chromosome NC_086376.1 (stored 2441416 different covered positions) Writing cytosine report for chromosome NC_086377.1 (stored 2005015 different covered positions) Writing cytosine report for chromosome NC_086378.1 (stored 2137309 different covered positions) Writing cytosine report for chromosome NC_086379.1 (stored 2077521 different covered positions) Writing cytosine report for chromosome NC_086380.1 (stored 1730750 different covered positions) Writing cytosine report for chromosome NC_086381.1 (stored 1871764 different covered positions) Writing cytosine report for chromosome NC_086382.1 (stored 1833670 different covered positions) Writing cytosine report for chromosome NC_086383.1 (stored 1590266 different covered positions) Writing cytosine report for chromosome NC_086384.1 (stored 1481492 different covered positions) Writing cytosine report for chromosome NC_086385.1 (stored 1347863 different covered positions) Writing cytosine report for chromosome NC_086386.1 (stored 1872326 different covered positions) Writing cytosine report for chromosome NW_026963290.1 (stored 175103 different covered positions) Writing cytosine report for chromosome NW_026963291.1 (stored 1866 different covered positions) Writing cytosine report for chromosome NW_026963292.1 (stored 102590 different covered positions) Writing cytosine report for chromosome NW_026963293.1 (stored 12826 different covered positions) Writing cytosine report for chromosome NW_026963294.1 (stored 121616 different covered positions) Writing cytosine report for chromosome NW_026963295.1 (stored 131075 different covered positions) Writing cytosine report for chromosome NW_026963296.1 (stored 65190 different covered positions) Writing cytosine report for chromosome NW_026963297.1 (stored 80428 different covered positions) Writing cytosine report for chromosome NW_026963298.1 (stored 72766 different covered positions) Writing cytosine report for chromosome NW_026963299.1 (stored 7155 different covered positions) Writing cytosine report for chromosome NW_026963300.1 (stored 4065 different covered positions) Writing cytosine report for chromosome NW_026963301.1 (stored 92045 different covered positions) Writing cytosine report for chromosome NW_026963302.1 (stored 98153 different covered positions) Writing cytosine report for chromosome NW_026963303.1 (stored 6261 different covered positions) Writing cytosine report for chromosome NW_026963304.1 (stored 89234 different covered positions) Writing cytosine report for chromosome NW_026963305.1 (stored 32876 different covered positions) Writing cytosine report for chromosome NW_026963306.1 (stored 532 different covered positions) Writing cytosine report for chromosome NW_026963307.1 (stored 2934 different covered positions) Writing cytosine report for chromosome NW_026963308.1 (stored 7330 different covered positions) Writing cytosine report for chromosome NW_026963309.1 (stored 15549 different covered positions) Writing cytosine report for chromosome NW_026963310.1 (stored 70639 different covered positions) Writing cytosine report for chromosome NW_026963311.1 (stored 30192 different covered positions) Writing cytosine report for chromosome NW_026963312.1 (stored 17506 different covered positions) Writing cytosine report for chromosome NW_026963313.1 (stored 16216 different covered positions) Writing cytosine report for chromosome NW_026963314.1 (stored 64234 different covered positions) Writing cytosine report for chromosome NW_026963315.1 (stored 60850 different covered positions) Writing cytosine report for chromosome NW_026963316.1 (stored 11168 different covered positions) Writing cytosine report for chromosome NW_026963317.1 (stored 80375 different covered positions) Writing cytosine report for chromosome NW_026963318.1 (stored 66989 different covered positions) Writing cytosine report for chromosome NW_026963319.1 (stored 6426 different covered positions) Writing cytosine report for chromosome NW_026963320.1 (stored 2456 different covered positions) Writing cytosine report for chromosome NW_026963321.1 (stored 17405 different covered positions) Writing cytosine report for chromosome NW_026963322.1 (stored 13039 different covered positions) Writing cytosine report for chromosome NW_026963323.1 (stored 2640 different covered positions) Writing cytosine report for chromosome NW_026963324.1 (stored 2047 different covered positions) Writing cytosine report for chromosome NW_026963325.1 (stored 73 different covered positions) Writing cytosine report for chromosome NW_026963326.1 (stored 1803 different covered positions) Writing cytosine report for chromosome NW_026963327.1 (stored 82 different covered positions) Writing cytosine report for chromosome NW_026963329.1 (stored 4321 different covered positions) Writing cytosine report for chromosome NW_026963330.1 (stored 512 different covered positions) Writing cytosine report for chromosome NW_026963331.1 (stored 478 different covered positions) Writing cytosine report for chromosome NW_026963332.1 (stored 22829 different covered positions) Writing cytosine report for chromosome NW_026963333.1 (stored 3012 different covered positions) Writing cytosine report for chromosome NW_026963334.1 (stored 11 different covered positions) Writing cytosine report for chromosome NW_026963335.1 (stored 9500 different covered positions) Writing cytosine report for chromosome NW_026963336.1 (stored 61 different covered positions) Writing cytosine report for chromosome NW_026963337.1 (stored 13140 different covered positions) Writing cytosine report for chromosome NW_026963338.1 (stored 8334 different covered positions) Writing cytosine report for chromosome NW_026963339.1 (stored 2356 different covered positions) Writing cytosine report for chromosome NW_026963340.1 (stored 76748 different covered positions) Writing cytosine report for chromosome NW_026963341.1 (stored 996 different covered positions) Writing cytosine report for chromosome NW_026963342.1 (stored 5356 different covered positions) Writing cytosine report for chromosome NW_026963343.1 (stored 9143 different covered positions) Writing cytosine report for chromosome NW_026963344.1 (stored 2469 different covered positions) Writing cytosine report for chromosome NW_026963345.1 (stored 5862 different covered positions) Writing cytosine report for chromosome NW_026963346.1 (stored 12631 different covered positions) Writing cytosine report for chromosome NW_026963347.1 (stored 22892 different covered positions) Writing cytosine report for chromosome NW_026963348.1 (stored 3 different covered positions) Writing cytosine report for chromosome NW_026963349.1 (stored 531 different covered positions) Writing cytosine report for chromosome NW_026963350.1 (stored 17689 different covered positions) Writing cytosine report for chromosome NW_026963351.1 (stored 16 different covered positions) Writing cytosine report for chromosome NW_026963352.1 (stored 5156 different covered positions) Writing cytosine report for chromosome NW_026963354.1 (stored 8004 different covered positions) Writing cytosine report for chromosome NW_026963355.1 (stored 929 different covered positions) Writing cytosine report for chromosome NW_026963356.1 (stored 42 different covered positions) Writing cytosine report for chromosome NW_026963357.1 (stored 10381 different covered positions) Writing cytosine report for chromosome NW_026963358.1 (stored 94 different covered positions) Writing cytosine report for chromosome NW_026963359.1 (stored 4 different covered positions) Writing cytosine report for chromosome NW_026963360.1 (stored 1456 different covered positions) Writing cytosine report for chromosome NW_026963361.1 (stored 53 different covered positions) Writing cytosine report for chromosome NW_026963362.1 (stored 350 different covered positions) Writing cytosine report for chromosome NW_026963363.1 (stored 8389 different covered positions) Writing cytosine report for chromosome NW_026963364.1 (stored 1378 different covered positions) Writing cytosine report for chromosome NW_026963365.1 (stored 123 different covered positions) Writing cytosine report for chromosome NW_026963366.1 (stored 597 different covered positions) Writing cytosine report for chromosome NW_026963367.1 (stored 524 different covered positions) Writing cytosine report for chromosome NW_026963368.1 (stored 910 different covered positions) Writing cytosine report for chromosome NW_026963369.1 (stored 288 different covered positions) Writing cytosine report for chromosome NW_026963370.1 (stored 16017 different covered positions) Writing cytosine report for chromosome NW_026963371.1 (stored 6540 different covered positions) Writing cytosine report for chromosome NW_026963372.1 (stored 11701 different covered positions) Writing cytosine report for chromosome NW_026963373.1 (stored 280 different covered positions) Writing cytosine report for chromosome NW_026963374.1 (stored 425 different covered positions) Writing cytosine report for chromosome NW_026963375.1 (stored 1220 different covered positions) Writing cytosine report for chromosome NW_026963376.1 (stored 393 different covered positions) Writing cytosine report for chromosome NW_026963377.1 (stored 15 different covered positions) Writing cytosine report for chromosome NW_026963378.1 (stored 6787 different covered positions) Writing cytosine report for chromosome NW_026963379.1 (stored 21 different covered positions) Writing cytosine report for chromosome NW_026963380.1 (stored 83 different covered positions) Writing cytosine report for chromosome NW_026963381.1 (stored 27 different covered positions) Writing cytosine report for chromosome NW_026963382.1 (stored 379 different covered positions) Writing cytosine report for chromosome NW_026963383.1 (stored 1056 different covered positions) Writing cytosine report for chromosome NW_026963384.1 (stored 72 different covered positions) Writing cytosine report for chromosome NW_026963385.1 (stored 434 different covered positions) Writing cytosine report for chromosome NW_026963386.1 (stored 278 different covered positions) Writing cytosine report for chromosome NW_026963387.1 (stored 242 different covered positions) Writing cytosine report for chromosome NW_026963388.1 (stored 114 different covered positions) Writing cytosine report for chromosome NW_026963389.1 (stored 11 different covered positions) Writing cytosine report for chromosome NW_026963390.1 (stored 1552 different covered positions) Writing cytosine report for chromosome NW_026963391.1 (stored 377 different covered positions) Writing cytosine report for chromosome NW_026963392.1 (stored 184 different covered positions) Writing cytosine report for chromosome NW_026963393.1 (stored 3 different covered positions) Writing cytosine report for chromosome NW_026963394.1 (stored 25 different covered positions) Writing cytosine report for chromosome NW_026963395.1 (stored 263 different covered positions) Writing cytosine report for chromosome NW_026963396.1 (stored 465 different covered positions) Writing cytosine report for chromosome NW_026963397.1 (stored 113 different covered positions) Writing cytosine report for chromosome NW_026963398.1 (stored 91 different covered positions) Writing cytosine report for chromosome NW_026963399.1 (stored 220 different covered positions) Writing cytosine report for chromosome NW_026963400.1 (stored 608 different covered positions) Writing cytosine report for chromosome NW_026963401.1 (stored 63 different covered positions) Writing cytosine report for chromosome NW_026963402.1 (stored 1225 different covered positions) Writing cytosine report for chromosome NW_026963403.1 (stored 33 different covered positions) Writing cytosine report for chromosome NW_026963404.1 (stored 196 different covered positions) Writing cytosine report for chromosome NW_026963405.1 (stored 61 different covered positions) Writing cytosine report for chromosome NW_026963406.1 (stored 74 different covered positions) Writing cytosine report for chromosome NW_026963407.1 (stored 23 different covered positions) Writing cytosine report for chromosome NW_026963408.1 (stored 2725 different covered positions) Writing cytosine report for chromosome NW_026963409.1 (stored 204 different covered positions) Writing cytosine report for chromosome NW_026963410.1 (stored 1592 different covered positions) Writing cytosine report for chromosome NW_026963411.1 (stored 54 different covered positions) Writing cytosine report for chromosome NW_026963412.1 (stored 117 different covered positions) Writing cytosine report for chromosome NW_026963413.1 (stored 1 different covered positions) Writing cytosine report for chromosome NW_026963414.1 (stored 115 different covered positions) Writing cytosine report for chromosome NW_026963415.1 (stored 439 different covered positions) Writing cytosine report for chromosome NW_026963416.1 (stored 234 different covered positions) Writing cytosine report for chromosome NW_026963417.1 (stored 317 different covered positions) Writing cytosine report for chromosome NW_026963418.1 (stored 2916 different covered positions) Writing cytosine report for chromosome NW_026963419.1 (stored 734 different covered positions) Writing cytosine report for chromosome NW_026963420.1 (stored 55 different covered positions) Writing cytosine report for chromosome NW_026963421.1 (stored 161 different covered positions) Writing cytosine report for chromosome NW_026963422.1 (stored 20 different covered positions) Writing cytosine report for chromosome NW_026963423.1 (stored 197 different covered positions) Writing cytosine report for chromosome NW_026963424.1 (stored 1440 different covered positions) Writing cytosine report for chromosome NW_026963425.1 (stored 26 different covered positions) Writing cytosine report for chromosome NW_026963426.1 (stored 76 different covered positions) Writing cytosine report for chromosome NW_026963427.1 (stored 2292 different covered positions) Writing cytosine report for chromosome NW_026963428.1 (stored 76 different covered positions) Writing cytosine report for chromosome NW_026963429.1 (stored 93 different covered positions) Writing cytosine report for chromosome NW_026963430.1 (stored 616 different covered positions) Writing cytosine report for chromosome NW_026963431.1 (stored 406 different covered positions) Writing cytosine report for chromosome NW_026963432.1 (stored 335 different covered positions) Writing cytosine report for chromosome NW_026963433.1 (stored 486 different covered positions) Writing cytosine report for chromosome NW_026963434.1 (stored 6 different covered positions) Writing cytosine report for chromosome NW_026963435.1 (stored 714 different covered positions) Writing cytosine report for chromosome NW_026963436.1 (stored 2153 different covered positions) Writing cytosine report for chromosome NW_026963437.1 (stored 369 different covered positions) Writing cytosine report for chromosome NW_026963438.1 (stored 129 different covered positions) Writing cytosine report for chromosome NW_026963439.1 (stored 193 different covered positions) Writing cytosine report for chromosome NW_026963440.1 (stored 48 different covered positions) Writing cytosine report for chromosome NW_026963441.1 (stored 143 different covered positions) Writing cytosine report for chromosome NW_026963442.1 (stored 698 different covered positions) Writing cytosine report for chromosome NW_026963443.1 (stored 840 different covered positions) Writing cytosine report for chromosome NW_026963444.1 (stored 3 different covered positions) Writing cytosine report for chromosome NW_026963445.1 (stored 1632 different covered positions) Writing cytosine report for chromosome NW_026963446.1 (stored 5 different covered positions) Writing cytosine report for chromosome NW_026963447.1 (stored 1620 different covered positions) Writing cytosine report for chromosome NW_026963448.1 (stored 961 different covered positions) Writing cytosine report for chromosome NW_026963449.1 (stored 173 different covered positions) Writing cytosine report for chromosome NW_026963450.1 (stored 81 different covered positions) Writing cytosine report for chromosome NW_026963451.1 (stored 43 different covered positions) Writing cytosine report for chromosome NW_026963452.1 (stored 6 different covered positions) Writing cytosine report for chromosome NW_026963453.1 (stored 200 different covered positions) Writing cytosine report for chromosome NW_026963455.1 (stored 1521 different covered positions) Writing cytosine report for chromosome NW_026963456.1 (stored 139 different covered positions) Writing cytosine report for chromosome NW_026963457.1 (stored 115 different covered positions) Writing cytosine report for chromosome NW_026963458.1 (stored 5 different covered positions) Writing cytosine report for chromosome NW_026963459.1 (stored 142 different covered positions) Writing cytosine report for chromosome NW_026963460.1 (stored 20 different covered positions) Writing cytosine report for chromosome NW_026963461.1 (stored 3130 different covered positions) Writing cytosine report for chromosome NW_026963462.1 (stored 1117 different covered positions) Writing cytosine report for chromosome NW_026963463.1 (stored 13 different covered positions) Writing cytosine report for chromosome NW_026963467.1 (stored 41 different covered positions) Writing cytosine report for chromosome NW_026963468.1 (stored 16 different covered positions) Writing cytosine report for chromosome NW_026963470.1 (stored 1736 different covered positions) Writing cytosine report for chromosome NW_026963471.1 (stored 1400 different covered positions) Writing cytosine report for chromosome NW_026963472.1 (stored 106 different covered positions) Writing cytosine report for chromosome NW_026963473.1 (stored 362 different covered positions) Writing cytosine report for chromosome NW_026963474.1 (stored 4 different covered positions) Writing cytosine report for chromosome NW_026963475.1 (stored 1942 different covered positions) Writing cytosine report for chromosome NW_026963476.1 (stored 186 different covered positions) Writing cytosine report for chromosome NW_026963477.1 (stored 3 different covered positions) Writing cytosine report for chromosome NW_026963479.1 (stored 88 different covered positions) Writing cytosine report for chromosome NW_026963480.1 (stored 809 different covered positions) Writing cytosine report for chromosome NW_026963481.1 (stored 383 different covered positions) Writing cytosine report for chromosome NW_026963482.1 (stored 16 different covered positions) Writing cytosine report for chromosome NW_026963484.1 (stored 76 different covered positions) Writing cytosine report for chromosome NW_026963486.1 (stored 162 different covered positions) Writing cytosine report for chromosome NW_026963487.1 (stored 124 different covered positions) Writing cytosine report for chromosome NW_026963488.1 (stored 7 different covered positions) Writing cytosine report for chromosome NW_026963489.1 (stored 117 different covered positions) Writing cytosine report for chromosome NW_026963490.1 (stored 32 different covered positions) Writing cytosine report for chromosome NW_026963491.1 (stored 81 different covered positions) Writing cytosine report for chromosome NW_026963492.1 (stored 50 different covered positions) Writing cytosine report for chromosome NW_026963493.1 (stored 1161 different covered positions) Writing cytosine report for chromosome NW_026963494.1 (stored 997 different covered positions) Writing cytosine report for chromosome NW_026963495.1 (stored 1505 different covered positions) Writing cytosine report for chromosome NW_026963496.1 (stored 55 different covered positions) Writing cytosine report for chromosome NW_026963497.1 (stored 15 different covered positions) Writing cytosine report for chromosome NW_026963498.1 (stored 6 different covered positions) Writing cytosine report for chromosome NW_026963499.1 (stored 23 different covered positions) Writing cytosine report for chromosome NW_026963500.1 (stored 1808 different covered positions) Writing cytosine report for chromosome NW_026963501.1 (stored 3 different covered positions) Writing cytosine report for chromosome NW_026963502.1 (stored 1506 different covered positions) Writing cytosine report for chromosome NW_026963503.1 (stored 154 different covered positions) Writing cytosine report for chromosome NW_026963504.1 (stored 21 different covered positions) Writing cytosine report for chromosome NW_026963505.1 (stored 2303 different covered positions) Writing cytosine report for chromosome NW_026963506.1 (stored 208 different covered positions) Writing cytosine report for chromosome NW_026963507.1 (stored 100 different covered positions) Writing cytosine report for chromosome NW_026963508.1 (stored 173 different covered positions) Writing cytosine report for chromosome NW_026963509.1 (stored 131 different covered positions) Writing cytosine report for chromosome NW_026963512.1 (stored 148 different covered positions) Writing cytosine report for chromosome NW_026963513.1 (stored 95 different covered positions) Writing cytosine report for chromosome NW_026963514.1 (stored 1048 different covered positions) Writing cytosine report for chromosome NW_026963515.1 (stored 22 different covered positions) Writing cytosine report for chromosome NW_026963516.1 (stored 42 different covered positions) Writing cytosine report for chromosome NW_026963517.1 (stored 11 different covered positions) Writing cytosine report for chromosome NW_026963518.1 (stored 1175 different covered positions) Writing cytosine report for chromosome NW_026963519.1 (stored 1976 different covered positions) Writing cytosine report for chromosome NW_026963520.1 (stored 75 different covered positions) Writing cytosine report for chromosome NW_026963521.1 (stored 29 different covered positions) Writing cytosine report for chromosome NW_026963523.1 (stored 165 different covered positions) Writing cytosine report for chromosome NW_026963524.1 (stored 261 different covered positions) Writing cytosine report for chromosome NW_026963525.1 (stored 26 different covered positions) Writing cytosine report for chromosome NW_026963526.1 (stored 10 different covered positions) Writing cytosine report for chromosome NW_026963527.1 (stored 38 different covered positions) Writing cytosine report for chromosome NW_026963528.1 (stored 49 different covered positions) Writing cytosine report for chromosome NW_026963530.1 (stored 280 different covered positions) Writing cytosine report for chromosome NW_026963531.1 (stored 134 different covered positions) Writing cytosine report for chromosome NW_026963532.1 (stored 3 different covered positions) Writing cytosine report for chromosome NW_026963533.1 (stored 1267 different covered positions) Writing cytosine report for chromosome NW_026963534.1 (stored 281 different covered positions) Writing cytosine report for chromosome NW_026963535.1 (stored 23 different covered positions) Writing cytosine report for chromosome NW_026963537.1 (stored 1668 different covered positions) Writing cytosine report for chromosome NW_026963538.1 (stored 81 different covered positions) Writing cytosine report for chromosome NW_026963539.1 (stored 17 different covered positions) Writing cytosine report for chromosome NW_026963540.1 (stored 24 different covered positions) Writing cytosine report for chromosome NW_026963541.1 (stored 801 different covered positions) Writing cytosine report for chromosome NW_026963542.1 (stored 456 different covered positions) Writing cytosine report for chromosome NW_026963543.1 (stored 3 different covered positions) Writing cytosine report for chromosome NW_026963544.1 (stored 205 different covered positions) Writing cytosine report for chromosome NW_026963545.1 (stored 27 different covered positions) Writing cytosine report for chromosome NW_026963546.1 (stored 180 different covered positions) Writing cytosine report for chromosome NW_026963547.1 (stored 11 different covered positions) Writing cytosine report for chromosome NW_026963548.1 (stored 1598 different covered positions) Writing cytosine report for chromosome NW_026963549.1 (stored 1302 different covered positions) Writing cytosine report for chromosome NW_026963550.1 (stored 196 different covered positions) Writing cytosine report for chromosome NW_026963551.1 (stored 40 different covered positions) Writing cytosine report for chromosome NW_026963552.1 (stored 67 different covered positions) Writing cytosine report for chromosome NW_026963553.1 (stored 2933 different covered positions) Writing cytosine report for chromosome NW_026963554.1 (stored 1613 different covered positions) Writing cytosine report for chromosome NW_026963555.1 (stored 979 different covered positions) Writing cytosine report for chromosome NW_026963556.1 (stored 86 different covered positions) Writing cytosine report for chromosome NW_026963557.1 (stored 74 different covered positions) Writing cytosine report for chromosome NW_026963558.1 (stored 49 different covered positions) Writing cytosine report for chromosome NW_026963559.1 (stored 1495 different covered positions) Writing cytosine report for chromosome NW_026963560.1 (stored 1489 different covered positions) Writing cytosine report for chromosome NW_026963561.1 (stored 20 different covered positions) Writing cytosine report for chromosome NW_026963562.1 (stored 20 different covered positions) Writing cytosine report for chromosome NW_026963563.1 (stored 88 different covered positions) Writing cytosine report for chromosome NW_026963564.1 (stored 786 different covered positions) Writing cytosine report for chromosome NW_026963565.1 (stored 8 different covered positions) Writing cytosine report for chromosome NW_026963567.1 (stored 328 different covered positions) Writing cytosine report for chromosome NW_026963568.1 (stored 1423 different covered positions) Writing cytosine report for chromosome NW_026963569.1 (stored 97 different covered positions) Writing cytosine report for chromosome NW_026963570.1 (stored 1935 different covered positions) Writing cytosine report for chromosome NW_026963571.1 (stored 102 different covered positions) Writing cytosine report for chromosome NW_026963572.1 (stored 230 different covered positions) Writing cytosine report for chromosome NW_026963573.1 (stored 1934 different covered positions) Writing cytosine report for chromosome NW_026963574.1 (stored 34 different covered positions) Writing cytosine report for chromosome NW_026963575.1 (stored 2669 different covered positions) Writing cytosine report for chromosome NW_026963576.1 (stored 2204 different covered positions) Writing cytosine report for chromosome NW_026963577.1 (stored 171 different covered positions) Writing cytosine report for chromosome NW_026963579.1 (stored 283 different covered positions) Writing cytosine report for chromosome NW_026963580.1 (stored 22 different covered positions) Writing cytosine report for chromosome NW_026963581.1 (stored 1914 different covered positions) Writing cytosine report for chromosome NW_026963582.1 (stored 277 different covered positions) Writing cytosine report for chromosome NW_026963583.1 (stored 136 different covered positions) Writing cytosine report for chromosome NW_026963584.1 (stored 65 different covered positions) Writing cytosine report for chromosome NW_026963585.1 (stored 464 different covered positions) Writing cytosine report for chromosome NW_026963587.1 (stored 5 different covered positions) Writing cytosine report for chromosome NW_026963588.1 (stored 365 different covered positions) Writing cytosine report for chromosome NW_026963589.1 (stored 7 different covered positions) Writing cytosine report for chromosome NW_026963590.1 (stored 14 different covered positions) Writing cytosine report for chromosome NW_026963591.1 (stored 147 different covered positions) Writing cytosine report for chromosome NW_026963593.1 (stored 1190 different covered positions) Writing cytosine report for chromosome NW_026963594.1 (stored 27 different covered positions) Writing cytosine report for chromosome NW_026963595.1 (stored 822 different covered positions) Writing cytosine report for chromosome NW_026963596.1 (stored 1157 different covered positions) Writing cytosine report for chromosome NW_026963598.1 (stored 4 different covered positions) Writing cytosine report for chromosome NW_026963599.1 (stored 161 different covered positions) Writing cytosine report for chromosome NW_026963600.1 (stored 85 different covered positions) Writing cytosine report for chromosome NW_026963601.1 (stored 2185 different covered positions) Writing cytosine report for chromosome NW_026963603.1 (stored 2050 different covered positions) Writing cytosine report for chromosome NW_026963604.1 (stored 8 different covered positions) Writing cytosine report for chromosome NW_026963605.1 (stored 167 different covered positions) Writing cytosine report for chromosome NW_026963607.1 (stored 415 different covered positions) Writing cytosine report for chromosome NW_026963608.1 (stored 284 different covered positions) Writing cytosine report for chromosome NW_026963609.1 (stored 336 different covered positions) Writing cytosine report for chromosome NW_026963610.1 (stored 338 different covered positions) Writing cytosine report for chromosome NW_026963611.1 (stored 6 different covered positions) Writing cytosine report for chromosome NW_026963612.1 (stored 10 different covered positions) Writing cytosine report for chromosome NW_026963613.1 (stored 23 different covered positions) Writing cytosine report for chromosome NW_026963614.1 (stored 1088 different covered positions) Writing cytosine report for chromosome NW_026963617.1 (stored 3 different covered positions) Writing cytosine report for chromosome NW_026963618.1 (stored 42 different covered positions) Writing cytosine report for chromosome NW_026963620.1 (stored 1203 different covered positions) Writing cytosine report for chromosome NW_026963621.1 (stored 1143 different covered positions) Writing cytosine report for chromosome NW_026963622.1 (stored 2 different covered positions) Writing cytosine report for chromosome NW_026963623.1 (stored 1238 different covered positions) Writing cytosine report for chromosome NW_026963624.1 (stored 89 different covered positions) Writing cytosine report for chromosome NW_026963625.1 (stored 1720 different covered positions) Writing cytosine report for chromosome NW_026963626.1 (stored 87 different covered positions) Writing cytosine report for chromosome NW_026963627.1 (stored 19 different covered positions) Writing cytosine report for chromosome NW_026963628.1 (stored 31 different covered positions) Writing cytosine report for chromosome NW_026963629.1 (stored 1865 different covered positions) Writing cytosine report for chromosome NW_026963631.1 (stored 1038 different covered positions) Writing cytosine report for chromosome NW_026963632.1 (stored 40 different covered positions) Writing cytosine report for chromosome NW_026963633.1 (stored 182 different covered positions) Writing cytosine report for chromosome NW_026963634.1 (stored 1069 different covered positions) Writing cytosine report for chromosome NW_026963635.1 (stored 251 different covered positions) Writing cytosine report for chromosome NW_026963636.1 (stored 1467 different covered positions) Writing cytosine report for chromosome NW_026963637.1 (stored 58 different covered positions) Writing cytosine report for chromosome NW_026963638.1 (stored 1581 different covered positions) Writing cytosine report for chromosome NW_026963639.1 (stored 1491 different covered positions) Writing cytosine report for chromosome NW_026963640.1 (stored 14 different covered positions) Writing cytosine report for chromosome NW_026963641.1 (stored 76 different covered positions) Writing cytosine report for chromosome NW_026963642.1 (stored 1514 different covered positions) Writing cytosine report for chromosome NW_026963644.1 (stored 155 different covered positions) Writing cytosine report for chromosome NW_026963645.1 (stored 36 different covered positions) Writing cytosine report for chromosome NW_026963646.1 (stored 1597 different covered positions) Writing cytosine report for chromosome NW_026963647.1 (stored 5 different covered positions) Writing cytosine report for chromosome NW_026963648.1 (stored 34 different covered positions) Writing cytosine report for chromosome NW_026963649.1 (stored 26 different covered positions) Writing cytosine report for chromosome NW_026963650.1 (stored 1431 different covered positions) Writing cytosine report for chromosome NW_026963652.1 (stored 5 different covered positions) Writing cytosine report for chromosome NW_026963653.1 (stored 439 different covered positions) Writing cytosine report for chromosome NW_026963654.1 (stored 15 different covered positions) Writing cytosine report for chromosome NW_026963655.1 (stored 1063 different covered positions) Writing cytosine report for chromosome NW_026963656.1 (stored 56 different covered positions) Writing cytosine report for chromosome NW_026963657.1 (stored 105 different covered positions) Writing cytosine report for chromosome NW_026963658.1 (stored 1039 different covered positions) Writing cytosine report for chromosome NW_026963659.1 (stored 28 different covered positions) Writing cytosine report for chromosome NW_026963660.1 (stored 39 different covered positions) Writing cytosine report for chromosome NW_026963661.1 (stored 1404 different covered positions) Writing cytosine report for chromosome NW_026963662.1 (stored 376 different covered positions) Writing cytosine report for chromosome NW_026963663.1 (stored 1320 different covered positions) Writing cytosine report for chromosome NW_026963664.1 (stored 49 different covered positions) Writing cytosine report for chromosome NW_026963665.1 (stored 20 different covered positions) Writing cytosine report for chromosome NW_026963666.1 (stored 21 different covered positions) Writing cytosine report for chromosome NW_026963667.1 (stored 1863 different covered positions) Writing cytosine report for chromosome NW_026963668.1 (stored 1180 different covered positions) Writing cytosine report for chromosome NW_026963669.1 (stored 7032 different covered positions) Writing cytosine report for chromosome NW_026963670.1 (stored 365 different covered positions) Writing cytosine report for chromosome NW_026963671.1 (stored 1600 different covered positions) Writing cytosine report for chromosome NW_026963672.1 (stored 29 different covered positions) Writing cytosine report for chromosome NW_026963673.1 (stored 24 different covered positions) Writing cytosine report for chromosome NW_026963674.1 (stored 61 different covered positions) Writing cytosine report for chromosome NW_026963675.1 (stored 946 different covered positions) Writing cytosine report for chromosome NW_026963676.1 (stored 105 different covered positions) Writing cytosine report for chromosome NW_026963677.1 (stored 181 different covered positions) Writing cytosine report for chromosome NW_026963679.1 (stored 50 different covered positions) Writing cytosine report for chromosome NW_026963680.1 (stored 11 different covered positions) Writing cytosine report for chromosome NW_026963681.1 (stored 26 different covered positions) Writing cytosine report for chromosome NW_026963682.1 (stored 227 different covered positions) Writing cytosine report for chromosome NW_026963683.1 (stored 597 different covered positions) Writing cytosine report for chromosome NW_026963684.1 (stored 309 different covered positions) Writing cytosine report for chromosome NW_026963685.1 (stored 114 different covered positions) Writing cytosine report for chromosome NW_026963686.1 (stored 265 different covered positions) Writing cytosine report for chromosome NW_026963687.1 (stored 99 different covered positions) Writing cytosine report for chromosome NW_026963688.1 (stored 907 different covered positions) Writing cytosine report for chromosome NW_026963689.1 (stored 49 different covered positions) Writing cytosine report for chromosome NW_026963690.1 (stored 981 different covered positions) Writing cytosine report for chromosome NW_026963691.1 (stored 277 different covered positions) Writing cytosine report for chromosome NW_026963692.1 (stored 6 different covered positions) Writing cytosine report for chromosome NW_026963693.1 (stored 1394 different covered positions) Writing cytosine report for chromosome NW_026963694.1 (stored 15 different covered positions) Writing cytosine report for chromosome NW_026963695.1 (stored 239 different covered positions) Writing cytosine report for chromosome NW_026963696.1 (stored 61 different covered positions) Writing cytosine report for chromosome NW_026963697.1 (stored 5 different covered positions) Writing cytosine report for chromosome NW_026963698.1 (stored 27 different covered positions) Writing cytosine report for chromosome NW_026963699.1 (stored 7 different covered positions) Writing cytosine report for chromosome NW_026963700.1 (stored 5 different covered positions) Writing cytosine report for chromosome NW_026963701.1 (stored 3829 different covered positions) Writing cytosine report for chromosome NW_026963702.1 (stored 8 different covered positions) Writing cytosine report for chromosome NW_026963703.1 (stored 9 different covered positions) Writing cytosine report for chromosome NW_026963704.1 (stored 1761 different covered positions) Writing cytosine report for chromosome NW_026963705.1 (stored 12 different covered positions) Writing cytosine report for chromosome NW_026963706.1 (stored 1891 different covered positions) Writing cytosine report for chromosome NW_026963707.1 (stored 1019 different covered positions) Writing cytosine report for chromosome NW_026963708.1 (stored 220 different covered positions) Writing cytosine report for chromosome NW_026963709.1 (stored 1504 different covered positions) Writing cytosine report for chromosome NW_026963710.1 (stored 197 different covered positions) Writing cytosine report for chromosome NW_026963711.1 (stored 2206 different covered positions) Writing cytosine report for chromosome NW_026963712.1 (stored 72 different covered positions) Writing cytosine report for chromosome NW_026963713.1 (stored 39 different covered positions) Writing cytosine report for chromosome NW_026963715.1 (stored 391 different covered positions) Writing cytosine report for chromosome NW_026963716.1 (stored 933 different covered positions) Writing cytosine report for chromosome NW_026963717.1 (stored 125 different covered positions) Writing cytosine report for chromosome NW_026963718.1 (stored 26 different covered positions) Writing cytosine report for chromosome NW_026963719.1 (stored 2075 different covered positions) Writing cytosine report for chromosome NW_026963720.1 (stored 5 different covered positions) Writing cytosine report for chromosome NW_026963721.1 (stored 1028 different covered positions) Writing cytosine report for chromosome NW_026963722.1 (stored 1216 different covered positions) Writing cytosine report for chromosome NW_026963723.1 (stored 88 different covered positions) Writing cytosine report for chromosome NW_026963725.1 (stored 3415 different covered positions) Writing cytosine report for chromosome NW_026963726.1 (stored 561 different covered positions) Writing cytosine report for chromosome NW_026963727.1 (stored 10 different covered positions) Writing cytosine report for chromosome NW_026963728.1 (stored 6 different covered positions) Writing cytosine report for chromosome NW_026963730.1 (stored 2506 different covered positions) Writing cytosine report for chromosome NW_026963731.1 (stored 233 different covered positions) Writing cytosine report for chromosome NW_026963732.1 (stored 144 different covered positions) Writing cytosine report for chromosome NW_026963733.1 (stored 9 different covered positions) Writing cytosine report for chromosome NW_026963734.1 (stored 13 different covered positions) Writing cytosine report for chromosome NW_026963735.1 (stored 1958 different covered positions) Writing cytosine report for chromosome NW_026963736.1 (stored 4 different covered positions) Writing cytosine report for chromosome NW_026963737.1 (stored 6 different covered positions) Writing cytosine report for chromosome NW_026963738.1 (stored 1128 different covered positions) Writing cytosine report for chromosome NW_026963739.1 (stored 929 different covered positions) Writing cytosine report for chromosome NW_026963741.1 (stored 4 different covered positions) Writing cytosine report for chromosome NW_026963742.1 (stored 1307 different covered positions) Writing cytosine report for chromosome NW_026963743.1 (stored 2034 different covered positions) Writing cytosine report for chromosome NW_026963744.1 (stored 28 different covered positions) Writing cytosine report for chromosome NW_026963745.1 (stored 1241 different covered positions) Writing cytosine report for chromosome NW_026963746.1 (stored 2324 different covered positions) Writing cytosine report for chromosome NW_026963747.1 (stored 4 different covered positions) Writing cytosine report for chromosome NW_026963748.1 (stored 58 different covered positions) Writing cytosine report for chromosome NW_026963749.1 (stored 45 different covered positions) Writing cytosine report for chromosome NW_026963750.1 (stored 4 different covered positions) Writing cytosine report for chromosome NW_026963751.1 (stored 55 different covered positions) Writing cytosine report for chromosome NW_026963752.1 (stored 155 different covered positions) Writing cytosine report for chromosome NW_026963753.1 (stored 2612 different covered positions) Writing cytosine report for chromosome NW_026963754.1 (stored 1060 different covered positions) Writing cytosine report for chromosome NW_026963755.1 (stored 1416 different covered positions) Writing cytosine report for chromosome NW_026963756.1 (stored 31 different covered positions) Writing cytosine report for chromosome NW_026963757.1 (stored 3 different covered positions) Writing cytosine report for chromosome NW_026963758.1 (stored 120 different covered positions) Writing cytosine report for chromosome NW_026963759.1 (stored 1260 different covered positions) Writing cytosine report for chromosome NW_026963760.1 (stored 21 different covered positions) Writing cytosine report for chromosome NW_026963761.1 (stored 100 different covered positions) Writing cytosine report for chromosome NW_026963762.1 (stored 17 different covered positions) Writing cytosine report for chromosome NW_026963764.1 (stored 1399 different covered positions) Writing cytosine report for chromosome NW_026963765.1 (stored 7 different covered positions) Writing cytosine report for chromosome NW_026963766.1 (stored 1143 different covered positions) Writing cytosine report for chromosome NW_026963767.1 (stored 1 different covered positions) Writing cytosine report for chromosome NW_026963768.1 (stored 131 different covered positions) Writing cytosine report for chromosome NW_026963769.1 (stored 8 different covered positions) Writing cytosine report for chromosome NW_026963770.1 (stored 5 different covered positions) Writing cytosine report for chromosome NW_026963771.1 (stored 2081 different covered positions) Writing cytosine report for chromosome NW_026963772.1 (stored 1718 different covered positions) Writing cytosine report for chromosome NW_026963773.1 (stored 130 different covered positions) Writing cytosine report for chromosome NW_026963776.1 (stored 2 different covered positions) Writing cytosine report for chromosome NW_026963777.1 (stored 978 different covered positions) Writing cytosine report for chromosome NW_026963778.1 (stored 1417 different covered positions) Writing cytosine report for chromosome NW_026963779.1 (stored 20 different covered positions) Writing cytosine report for chromosome NW_026963780.1 (stored 151 different covered positions) Writing cytosine report for chromosome NW_026963781.1 (stored 2085 different covered positions) Writing cytosine report for chromosome NW_026963782.1 (stored 234 different covered positions) Writing cytosine report for chromosome NW_026963783.1 (stored 62 different covered positions) Writing cytosine report for chromosome NW_026963784.1 (stored 1902 different covered positions) Writing cytosine report for chromosome NW_026963785.1 (stored 719 different covered positions) Writing cytosine report for chromosome NW_026963786.1 (stored 43 different covered positions) Writing cytosine report for chromosome NW_026963787.1 (stored 337 different covered positions) Writing cytosine report for chromosome NW_026963788.1 (stored 52 different covered positions) Writing cytosine report for chromosome NW_026963789.1 (stored 2349 different covered positions) Writing cytosine report for chromosome NW_026963790.1 (stored 18 different covered positions) Writing cytosine report for chromosome NW_026963793.1 (stored 17 different covered positions) Writing cytosine report for chromosome NW_026963794.1 (stored 12 different covered positions) Writing cytosine report for chromosome NW_026963795.1 (stored 428 different covered positions) Writing cytosine report for chromosome NW_026963796.1 (stored 35 different covered positions) Writing cytosine report for chromosome NW_026963797.1 (stored 1657 different covered positions) Writing cytosine report for chromosome NW_026963798.1 (stored 32 different covered positions) Writing cytosine report for chromosome NW_026963800.1 (stored 1448 different covered positions) Writing cytosine report for chromosome NW_026963801.1 (stored 3243 different covered positions) Writing cytosine report for chromosome NW_026963802.1 (stored 11 different covered positions) Writing cytosine report for chromosome NW_026963803.1 (stored 129 different covered positions) Writing cytosine report for chromosome NW_026963804.1 (stored 1452 different covered positions) Writing cytosine report for chromosome NW_026963805.1 (stored 181 different covered positions) Writing cytosine report for chromosome NW_026963806.1 (stored 32 different covered positions) Writing cytosine report for chromosome NW_026963807.1 (stored 77 different covered positions) Writing cytosine report for chromosome NW_026963808.1 (stored 2285 different covered positions) Writing cytosine report for chromosome NW_026963811.1 (stored 2605 different covered positions) Writing cytosine report for chromosome NW_026963812.1 (stored 1029 different covered positions) Writing cytosine report for last chromosome NW_026963814.1 (stored 75 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 498 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome NW_026963328.1 Writing cytosine report for not covered chromosome NW_026963353.1 Writing cytosine report for not covered chromosome NW_026963454.1 Writing cytosine report for not covered chromosome NW_026963464.1 Writing cytosine report for not covered chromosome NW_026963465.1 Writing cytosine report for not covered chromosome NW_026963466.1 Writing cytosine report for not covered chromosome NW_026963469.1 Writing cytosine report for not covered chromosome NW_026963478.1 Writing cytosine report for not covered chromosome NW_026963483.1 Writing cytosine report for not covered chromosome NW_026963485.1 Writing cytosine report for not covered chromosome NW_026963510.1 Writing cytosine report for not covered chromosome NW_026963511.1 Writing cytosine report for not covered chromosome NW_026963522.1 Writing cytosine report for not covered chromosome NW_026963529.1 Writing cytosine report for not covered chromosome NW_026963536.1 Writing cytosine report for not covered chromosome NW_026963566.1 Writing cytosine report for not covered chromosome NW_026963578.1 Writing cytosine report for not covered chromosome NW_026963586.1 Writing cytosine report for not covered chromosome NW_026963592.1 Writing cytosine report for not covered chromosome NW_026963597.1 Writing cytosine report for not covered chromosome NW_026963602.1 Writing cytosine report for not covered chromosome NW_026963606.1 Writing cytosine report for not covered chromosome NW_026963615.1 Writing cytosine report for not covered chromosome NW_026963616.1 Writing cytosine report for not covered chromosome NW_026963619.1 Writing cytosine report for not covered chromosome NW_026963630.1 Writing cytosine report for not covered chromosome NW_026963643.1 Writing cytosine report for not covered chromosome NW_026963651.1 Writing cytosine report for not covered chromosome NW_026963678.1 Writing cytosine report for not covered chromosome NW_026963714.1 Writing cytosine report for not covered chromosome NW_026963724.1 Writing cytosine report for not covered chromosome NW_026963729.1 Writing cytosine report for not covered chromosome NW_026963740.1 Writing cytosine report for not covered chromosome NW_026963763.1 Writing cytosine report for not covered chromosome NW_026963774.1 Writing cytosine report for not covered chromosome NW_026963775.1 Writing cytosine report for not covered chromosome NW_026963791.1 Writing cytosine report for not covered chromosome NW_026963792.1 Writing cytosine report for not covered chromosome NW_026963799.1 Writing cytosine report for not covered chromosome NW_026963809.1 Writing cytosine report for not covered chromosome NW_026963810.1 Writing cytosine report for not covered chromosome NW_026963813.1 Writing cytosine report for not covered chromosome NW_026963815.1 Finished writing out cytosine report (processed 541 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>output/25-meth-extract/93M.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to output/25-meth-extract/93M.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq!