70M_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.0 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 49916449 lines in total Total number of methylation call strings processed: 99832898 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1424705166 Total methylated C's in CpG context: 21793252 Total methylated C's in CHG context: 2681924 Total methylated C's in CHH context: 12154813 Total C to T conversions in CpG context: 157643261 Total C to T conversions in CHG context: 230964171 Total C to T conversions in CHH context: 999467745 C methylated in CpG context: 12.1% C methylated in non-CpG context: 1.2%