[M::mm_idx_gen::53.814*1.37] collected minimizers
[M::mm_idx_gen::56.622*2.92] sorted minimizers
[M::main::56.622*2.92] loaded/built the index for 24184 target sequence(s)
[M::mm_mapopt_update::59.004*2.84] mid_occ = 500
[M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 24184
[M::mm_idx_stat::60.608*2.79] distinct minimizers: 111580803 (63.53% are singletons); average occurrences: 3.654; average spacing: 9.830; total length: 4008351139
[M::worker_pipeline::121.975*19.70] mapped 65452 sequences
[M::worker_pipeline::208.865*27.69] mapped 73445 sequences
[M::worker_pipeline::468.244*34.42] mapped 83170 sequences
[M::worker_pipeline::519.228*34.86] mapped 70461 sequences
[M::worker_pipeline::574.290*35.27] mapped 74168 sequences
[M::worker_pipeline::650.557*35.80] mapped 78299 sequences
[M::worker_pipeline::728.619*36.22] mapped 83896 sequences
[M::worker_pipeline::830.812*36.61] mapped 91700 sequences
[M::worker_pipeline::1095.994*37.40] mapped 95665 sequences
[M::worker_pipeline::1282.770*37.73] mapped 78564 sequences
[M::worker_pipeline::1328.953*37.81] mapped 78315 sequences
[M::worker_pipeline::1401.724*37.87] mapped 82491 sequences
[M::worker_pipeline::1473.603*37.96] mapped 87251 sequences
[M::worker_pipeline::1562.590*38.00] mapped 93501 sequences
[M::worker_pipeline::1692.765*38.12] mapped 104064 sequences
[M::worker_pipeline::2039.962*38.38] mapped 92685 sequences
[M::worker_pipeline::2090.840*38.41] mapped 74915 sequences
[M::worker_pipeline::2151.170*38.45] mapped 78629 sequences
[M::worker_pipeline::2222.179*38.49] mapped 82955 sequences
[M::worker_pipeline::2299.221*38.52] mapped 88636 sequences
[M::worker_pipeline::2399.747*38.56] mapped 96917 sequences
[M::worker_pipeline::2649.645*38.68] mapped 101105 sequences
[M::worker_pipeline::2853.928*38.77] mapped 74900 sequences
[M::worker_pipeline::2906.695*38.75] mapped 69550 sequences
[M::worker_pipeline::2980.240*38.77] mapped 73342 sequences
[M::worker_pipeline::3062.654*38.76] mapped 77878 sequences
[M::worker_pipeline::3161.593*38.79] mapped 84779 sequences
[M::worker_pipeline::3380.763*38.85] mapped 92792 sequences
[M::worker_pipeline::3643.907*38.92] mapped 75231 sequences
[M::worker_pipeline::3694.514*38.93] mapped 71683 sequences
[M::worker_pipeline::3763.621*38.94] mapped 75618 sequences
[M::worker_pipeline::3842.299*38.94] mapped 79711 sequences
[M::worker_pipeline::3933.443*38.93] mapped 86015 sequences
[M::worker_pipeline::4074.568*38.95] mapped 95806 sequences
[M::worker_pipeline::4421.515*39.02] mapped 83430 sequences
[M::worker_pipeline::4470.139*39.03] mapped 71852 sequences
[M::worker_pipeline::4539.963*38.98] mapped 75350 sequences
[M::worker_pipeline::4613.914*38.98] mapped 79728 sequences
[M::worker_pipeline::4694.419*38.98] mapped 85024 sequences
[M::worker_pipeline::4806.598*38.99] mapped 93464 sequences
[M::worker_pipeline::5128.087*39.03] mapped 92864 sequences
[M::worker_pipeline::5204.476*39.03] mapped 10665 sequences
[M::worker_pipeline::5275.932*39.00] mapped 63550 sequences
[M::worker_pipeline::5423.178*39.02] mapped 77401 sequences
[M::worker_pipeline::5553.958*39.04] mapped 68233 sequences
[M::worker_pipeline::5617.789*39.05] mapped 71991 sequences
[M::worker_pipeline::5702.154*39.05] mapped 78151 sequences
[M::worker_pipeline::5814.633*39.06] mapped 89093 sequences
[M::worker_pipeline::6094.948*39.09] mapped 82553 sequences
[M::worker_pipeline::6150.770*39.06] mapped 74226 sequences
[M::worker_pipeline::6224.029*39.07] mapped 80299 sequences
[M::worker_pipeline::6309.315*39.07] mapped 88340 sequences
[M::worker_pipeline::6510.148*39.09] mapped 98031 sequences
[M::worker_pipeline::6676.086*39.10] mapped 75022 sequences
[M::worker_pipeline::6743.363*39.08] mapped 75090 sequences
[M::worker_pipeline::6820.955*39.08] mapped 81576 sequences
[M::worker_pipeline::6920.764*39.09] mapped 92092 sequences
[M::worker_pipeline::7216.557*39.11] mapped 88046 sequences
[M::worker_pipeline::7267.541*39.10] mapped 65384 sequences
[M::worker_pipeline::7347.776*39.11] mapped 70427 sequences
[M::worker_pipeline::7436.403*39.11] mapped 77744 sequences
[M::worker_pipeline::7648.043*39.12] mapped 87577 sequences
[M::worker_pipeline::7831.911*39.13] mapped 69572 sequences
[M::worker_pipeline::7894.972*39.13] mapped 70855 sequences
[M::worker_pipeline::7975.983*39.13] mapped 76984 sequences
[M::worker_pipeline::8085.673*39.13] mapped 86686 sequences
[M::worker_pipeline::8385.917*39.14] mapped 82311 sequences
[M::worker_pipeline::8437.841*39.13] mapped 69382 sequences
[M::worker_pipeline::8514.996*39.13] mapped 74552 sequences
[M::worker_pipeline::8601.205*39.13] mapped 81895 sequences
[M::worker_pipeline::8804.419*39.15] mapped 91805 sequences
[M::worker_pipeline::8943.006*39.15] mapped 23419 sequences
[M::worker_pipeline::9019.791*39.08] mapped 57286 sequences
[M::worker_pipeline::9090.701*39.08] mapped 61253 sequences
[M::worker_pipeline::9178.922*39.08] mapped 66124 sequences
[M::worker_pipeline::9300.968*39.08] mapped 74451 sequences
[M::worker_pipeline::9659.147*39.11] mapped 75271 sequences
[M::worker_pipeline::9712.338*39.11] mapped 69892 sequences
[M::worker_pipeline::9760.866*39.11] mapped 72412 sequences
[M::worker_pipeline::9832.229*39.10] mapped 75861 sequences
[M::worker_pipeline::9904.723*39.11] mapped 79354 sequences
[M::worker_pipeline::9981.930*39.11] mapped 84012 sequences
[M::worker_pipeline::10069.659*39.12] mapped 89273 sequences
[M::worker_pipeline::10190.515*39.12] mapped 97301 sequences
[M::worker_pipeline::10495.810*39.13] mapped 95084 sequences
[M::worker_pipeline::10709.537*39.13] mapped 75033 sequences
[M::worker_pipeline::10763.049*39.13] mapped 71256 sequences
[M::worker_pipeline::10823.684*39.12] mapped 74522 sequences
[M::worker_pipeline::10898.502*39.12] mapped 78028 sequences
[M::worker_pipeline::10972.155*39.12] mapped 81413 sequences
[M::worker_pipeline::11058.430*39.11] mapped 86577 sequences
[M::worker_pipeline::11161.245*39.12] mapped 93214 sequences
[M::worker_pipeline::11351.956*39.13] mapped 100944 sequences
[M::worker_pipeline::11714.930*39.14] mapped 79941 sequences
[M::worker_pipeline::11775.259*39.14] mapped 61185 sequences
[M::worker_pipeline::11827.636*39.13] mapped 63432 sequences
[M::worker_pipeline::11899.021*39.14] mapped 66468 sequences
[M::worker_pipeline::11983.801*39.12] mapped 69498 sequences
[M::worker_pipeline::12067.032*39.12] mapped 73160 sequences
[M::worker_pipeline::12162.339*39.13] mapped 78343 sequences
[M::worker_pipeline::12302.758*39.13] mapped 85590 sequences
[M::worker_pipeline::12644.383*39.15] mapped 83022 sequences
[M::worker_pipeline::12867.396*39.16] mapped 68795 sequences
[M::worker_pipeline::12919.852*39.17] mapped 67183 sequences
[M::worker_pipeline::12978.885*39.16] mapped 70146 sequences
[M::worker_pipeline::13052.440*39.17] mapped 73553 sequences
[M::worker_pipeline::13130.367*39.16] mapped 76948 sequences
[M::worker_pipeline::13214.430*39.16] mapped 81483 sequences
[M::worker_pipeline::13324.985*39.16] mapped 87842 sequences
[M::worker_pipeline::13522.318*39.17] mapped 95119 sequences
[M::worker_pipeline::13897.579*39.18] mapped 76737 sequences
[M::worker_pipeline::13955.955*39.18] mapped 64179 sequences
[M::worker_pipeline::14005.677*39.18] mapped 66807 sequences
[M::worker_pipeline::14080.918*39.17] mapped 69425 sequences
[M::worker_pipeline::14157.306*39.17] mapped 72693 sequences
[M::worker_pipeline::14239.877*39.17] mapped 76648 sequences
[M::worker_pipeline::14335.739*39.17] mapped 81485 sequences
[M::worker_pipeline::14476.179*39.17] mapped 88649 sequences
[M::worker_pipeline::14819.901*39.18] mapped 84451 sequences
[M::worker_pipeline::14979.687*39.19] mapped 19972 sequences
[M::worker_pipeline::15049.259*39.18] mapped 56345 sequences
[M::worker_pipeline::15108.487*39.18] mapped 59555 sequences
[M::worker_pipeline::15196.349*39.18] mapped 63954 sequences
[M::worker_pipeline::15293.737*39.17] mapped 68840 sequences
[M::worker_pipeline::15402.814*39.17] mapped 75802 sequences
[M::worker_pipeline::15531.374*39.17] mapped 84744 sequences
[M::worker_pipeline::15793.428*39.17] mapped 92013 sequences
[M::worker_pipeline::16180.805*39.18] mapped 75751 sequences
[M::worker_pipeline::16247.361*39.17] mapped 61368 sequences
[M::worker_pipeline::16307.696*39.16] mapped 63583 sequences
[M::worker_pipeline::16362.625*39.16] mapped 66275 sequences
[M::worker_pipeline::16439.132*39.17] mapped 69671 sequences
[M::worker_pipeline::16540.183*39.15] mapped 72759 sequences
[M::worker_pipeline::16633.265*39.14] mapped 75711 sequences
[M::worker_pipeline::16721.818*39.14] mapped 80061 sequences
[M::worker_pipeline::16823.501*39.14] mapped 85853 sequences
[M::worker_pipeline::16930.708*39.12] mapped 90643 sequences
[M::worker_pipeline::17062.721*39.13] mapped 98497 sequences
[M::worker_pipeline::17257.253*39.13] mapped 106585 sequences
[M::worker_pipeline::17564.468*39.14] mapped 92913 sequences
[M::worker_pipeline::17915.288*39.16] mapped 85329 sequences
[M::worker_pipeline::18098.097*39.16] mapped 69724 sequences
[M::worker_pipeline::18161.325*39.16] mapped 64167 sequences
[M::worker_pipeline::18212.575*39.16] mapped 70180 sequences
[M::worker_pipeline::18290.179*39.15] mapped 71641 sequences
[M::worker_pipeline::18376.089*39.15] mapped 75158 sequences
[M::worker_pipeline::18468.798*39.15] mapped 78043 sequences
[M::worker_pipeline::18556.799*39.14] mapped 82624 sequences
[M::worker_pipeline::18659.733*39.14] mapped 88322 sequences
[M::worker_pipeline::18756.599*39.14] mapped 93415 sequences
[M::worker_pipeline::18882.890*39.14] mapped 101701 sequences
[M::worker_pipeline::19066.239*39.15] mapped 110216 sequences
[M::worker_pipeline::19364.835*39.15] mapped 96387 sequences
[M::worker_pipeline::19703.639*39.17] mapped 88705 sequences
[M::worker_pipeline::19888.604*39.17] mapped 65286 sequences
[M::worker_pipeline::19950.248*39.17] mapped 58429 sequences
[M::worker_pipeline::20009.345*39.17] mapped 60461 sequences
[M::worker_pipeline::20073.390*39.17] mapped 62874 sequences
[M::worker_pipeline::20158.118*39.16] mapped 65584 sequences
[M::worker_pipeline::20255.604*39.16] mapped 68749 sequences
[M::worker_pipeline::20350.557*39.16] mapped 71016 sequences
[M::worker_pipeline::20451.502*39.16] mapped 75782 sequences
[M::worker_pipeline::20557.416*39.16] mapped 81445 sequences
[M::worker_pipeline::20683.758*39.15] mapped 85968 sequences
[M::worker_pipeline::20832.607*39.15] mapped 93778 sequences
[M::worker_pipeline::21065.935*39.16] mapped 99117 sequences
[M::worker_pipeline::21397.712*39.17] mapped 80192 sequences
[M::worker_pipeline::21800.633*39.18] mapped 79630 sequences
[M::worker_pipeline::21863.656*39.17] mapped 60547 sequences
[M::worker_pipeline::21924.388*39.17] mapped 62296 sequences
[M::worker_pipeline::21978.077*39.17] mapped 66384 sequences
[M::worker_pipeline::22054.442*39.17] mapped 68472 sequences
[M::worker_pipeline::22150.993*39.16] mapped 71613 sequences
[M::worker_pipeline::22247.498*39.16] mapped 74692 sequences
[M::worker_pipeline::22331.944*39.16] mapped 78320 sequences
[M::worker_pipeline::22431.793*39.16] mapped 83358 sequences
[M::worker_pipeline::22533.855*39.16] mapped 88677 sequences
[M::worker_pipeline::22667.912*39.16] mapped 94964 sequences
[M::worker_pipeline::22840.623*39.16] mapped 104816 sequences
[M::worker_pipeline::23156.508*39.17] mapped 92773 sequences
[M::worker_pipeline::23486.444*39.18] mapped 82945 sequences
[M::worker_pipeline::23726.193*39.19] mapped 71088 sequences
[M::worker_pipeline::23790.568*39.18] mapped 62782 sequences
[M::worker_pipeline::23846.088*39.18] mapped 65051 sequences
[M::worker_pipeline::23906.108*39.18] mapped 68301 sequences
[M::worker_pipeline::23998.157*39.18] mapped 71051 sequences
[M::worker_pipeline::24084.507*39.18] mapped 74706 sequences
[M::worker_pipeline::24172.301*39.18] mapped 77174 sequences
[M::worker_pipeline::24272.605*39.17] mapped 82338 sequences
[M::worker_pipeline::24370.342*39.18] mapped 87590 sequences
[M::worker_pipeline::24491.553*39.18] mapped 92105 sequences
[M::worker_pipeline::24634.376*39.18] mapped 101673 sequences
[M::worker_pipeline::24918.018*39.19] mapped 103131 sequences
[M::worker_pipeline::25196.518*39.19] mapped 81775 sequences
[M::worker_pipeline::25559.143*39.19] mapped 66000 sequences
[M::main] Version: 2.31-r1302
[M::main] CMD: /opt/anaconda/anaconda3/envs/liftoff_env/bin/minimap2 -t 40 -x map-hifi /home/shared/16TB_HDD_01/sr320/github/project-lake-trout/data/genome/pb-hifiasm-siscowet-assembly.fa /home/shared/16TB_HDD_01/sr320/github/project-lake-trout/data/pacbio-reads/fastq2/m84082_250614_081210_s3.hifi_reads.demux.bc2071--bc2071.fastq.gz /home/shared/16TB_HDD_01/sr320/github/project-lake-trout/data/pacbio-reads/fastq2/m84082_250614_081210_s3.hifi_reads.demux.bc2072--bc2072.fastq.gz /home/shared/16TB_HDD_01/sr320/github/project-lake-trout/data/pacbio-reads/fastq2/m84082_250614_101514_s4.hifi_reads.demux.bc2073--bc2073.fastq.gz /home/shared/16TB_HDD_01/sr320/github/project-lake-trout/data/pacbio-reads/fastq2/m84082_251001_025627_s2.hifi_reads.bc2096.fastq.gz
[M::main] Real time: 25559.791 sec; CPU: 1001755.908 sec; Peak RSS: 18.603 GB