NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,900.8 |
| Mean read quality |
28.9 |
| Median read length |
6,097.0 |
| Median read quality |
38.8 |
| Number of reads |
974,807.0 |
| Read length N50 |
7,461.0 |
| STDEV read length |
3,181.7 |
| Total bases |
6,726,981,291.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q10 |
974806 (100.0%) 6727.0Mb |
| >Q15 |
974673 (100.0%) 6726.1Mb |
| >Q20 |
942043 (96.6%) 6461.9Mb |
| >Q25 |
870084 (89.3%) 5874.0Mb |
| >Q30 |
781245 (80.1%) 5160.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.0 (5006) |
| 2 |
40.0 (3299) |
| 3 |
40.0 (7383) |
| 4 |
40.0 (3508) |
| 5 |
40.0 (4928) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
41394 (26.7) |
| 2 |
41292 (25.2) |
| 3 |
41071 (16.0) |
| 4 |
40927 (20.4) |
| 5 |
40414 (26.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot