SRR6995998.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.25.1 Bismark result file: single-end (SAM format) Ignoring first 10 bp Ignoring last 2 bp Output specified: comprehensive Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 6576971 lines in total Total number of methylation call strings processed: 6576971 Final Cytosine Methylation Report ================================= Total number of C's analysed: 109653053 Total methylated C's in CpG context: 8319417 Total methylated C's in CHG context: 353689 Total methylated C's in CHH context: 618970 Total C to T conversions in CpG context: 13402637 Total C to T conversions in CHG context: 27433849 Total C to T conversions in CHH context: 59524491 C methylated in CpG context: 38.3% C methylated in non-CpG context: 1.1%