SRR6995997.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.25.1 Bismark result file: single-end (SAM format) Ignoring first 10 bp Ignoring last 2 bp Output specified: comprehensive Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 3996445 lines in total Total number of methylation call strings processed: 3996445 Final Cytosine Methylation Report ================================= Total number of C's analysed: 68226238 Total methylated C's in CpG context: 15976867 Total methylated C's in CHG context: 404647 Total methylated C's in CHH context: 514369 Total C to T conversions in CpG context: 4021091 Total C to T conversions in CHG context: 20277227 Total C to T conversions in CHH context: 27032037 C methylated in CpG context: 79.9% C methylated in non-CpG context: 1.9%