SRR6995996.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.25.1 Bismark result file: single-end (SAM format) Ignoring first 10 bp Ignoring last 2 bp Output specified: comprehensive Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 9190969 lines in total Total number of methylation call strings processed: 9190969 Final Cytosine Methylation Report ================================= Total number of C's analysed: 158697991 Total methylated C's in CpG context: 18405256 Total methylated C's in CHG context: 615866 Total methylated C's in CHH context: 997435 Total C to T conversions in CpG context: 11270225 Total C to T conversions in CHG context: 40414319 Total C to T conversions in CHH context: 86994890 C methylated in CpG context: 62.0% C methylated in non-CpG context: 1.3%