SRR6995995.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.25.1 Bismark result file: single-end (SAM format) Ignoring first 10 bp Ignoring last 2 bp Output specified: comprehensive Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 11805696 lines in total Total number of methylation call strings processed: 11805696 Final Cytosine Methylation Report ================================= Total number of C's analysed: 202046462 Total methylated C's in CpG context: 29843676 Total methylated C's in CHG context: 862864 Total methylated C's in CHH context: 1301356 Total C to T conversions in CpG context: 15819721 Total C to T conversions in CHG context: 55562498 Total C to T conversions in CHH context: 98656347 C methylated in CpG context: 65.4% C methylated in non-CpG context: 1.4%