SRR6995994.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.25.1 Bismark result file: single-end (SAM format) Ignoring first 10 bp Ignoring last 2 bp Output specified: comprehensive Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 557683 lines in total Total number of methylation call strings processed: 557683 Final Cytosine Methylation Report ================================= Total number of C's analysed: 7281535 Total methylated C's in CpG context: 2329252 Total methylated C's in CHG context: 41535 Total methylated C's in CHH context: 57383 Total C to T conversions in CpG context: 475614 Total C to T conversions in CHG context: 2230395 Total C to T conversions in CHH context: 2147356 C methylated in CpG context: 83.0% C methylated in non-CpG context: 2.2%