SRR6995998.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.25.1 Bismark result file: single-end (SAM format) Ignoring first 10 bp Ignoring last 2 bp Output specified: comprehensive Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 4019827 lines in total Total number of methylation call strings processed: 4019827 Final Cytosine Methylation Report ================================= Total number of C's analysed: 65616268 Total methylated C's in CpG context: 4140274 Total methylated C's in CHG context: 182459 Total methylated C's in CHH context: 360704 Total C to T conversions in CpG context: 8394261 Total C to T conversions in CHG context: 15842074 Total C to T conversions in CHH context: 36696496 C methylated in CpG context: 33.0% C methylated in non-CpG context: 1.0%