SRR6995997.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.25.1 Bismark result file: single-end (SAM format) Ignoring first 10 bp Ignoring last 2 bp Output specified: comprehensive Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 1091088 lines in total Total number of methylation call strings processed: 1091088 Final Cytosine Methylation Report ================================= Total number of C's analysed: 17924180 Total methylated C's in CpG context: 3526029 Total methylated C's in CHG context: 103667 Total methylated C's in CHH context: 141575 Total C to T conversions in CpG context: 1331382 Total C to T conversions in CHG context: 5160083 Total C to T conversions in CHH context: 7661444 C methylated in CpG context: 72.6% C methylated in non-CpG context: 1.9%