SRR6995996.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.25.1 Bismark result file: single-end (SAM format) Ignoring first 10 bp Ignoring last 2 bp Output specified: comprehensive Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 4741995 lines in total Total number of methylation call strings processed: 4741995 Final Cytosine Methylation Report ================================= Total number of C's analysed: 79140994 Total methylated C's in CpG context: 7385067 Total methylated C's in CHG context: 271905 Total methylated C's in CHH context: 502785 Total C to T conversions in CpG context: 6837533 Total C to T conversions in CHG context: 19257383 Total C to T conversions in CHH context: 44886321 C methylated in CpG context: 51.9% C methylated in non-CpG context: 1.2%