{
  "tool": "Trim Galore",
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  "command_line": "trim_galore --cores 20 --quality 20 --length 20 --no_poly_g --adapter AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC --adapter CGGAAGAGCACACGTCTGAACTCCAGTCAC --fastqc --fastqc_args --outdir ../output/02-qc-trim/fastqc-trimmed --output_dir ../data/trimmed-reads ../data/raw-reads/SRR6995997.fastq.gz",
  "parameters": {
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    "adapters": [{"name": "adapter_1", "sequence": "AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC"}, {"name": "adapter_2", "sequence": "CGGAAGAGCACACGTCTGAACTCCAGTCAC"}],
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    "stringency": 1,
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    "trim_n": false,
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    "non_directional": false,
    "poly_a": false,
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    "three_prime_clip_r1": null,
    "three_prime_clip_r2": null,
    "max_n": null,
    "discard_untrimmed": false,
    "consider_already_trimmed": null
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}