[2025-08-15 07:11:56,702] root [DEBUG ] Logging to file: /tmp/tmplksrduk0/multiqc.log [2025-08-15 07:11:56,703] multiqc.core.update_config [DEBUG ] This is MultiQC v1.29 [2025-08-15 07:11:56,703] multiqc.core.update_config [DEBUG ] Running Python 3.13.3 | packaged by conda-forge | (main, Apr 14 2025, 20:44:03) [GCC 13.3.0] [2025-08-15 07:11:56,865] multiqc.config [INFO ] Loading config settings from: multiqc_config.yml [2025-08-15 07:11:56,865] multiqc.config [DEBUG ] New config: {'report_comment': 'This report has been generated by the nf-core/methylseq analysis pipeline. For information about how to interpret these results, please see the documentation.\n', 'report_section_order': {'nf-core-methylseq-methods-description': {'order': -1000}, 'software_versions': {'order': -1001}, 'nf-core-methylseq-summary': {'order': -1002}}, 'export_plots': True, 'disable_version_detection': True, 'table_columns_visible': {'QualiMap': {'avg_gc': False, '30_x_pc': False, 'percentage_aligned': False}}, 'top_modules': ['bismark']} [2025-08-15 07:11:56,869] urllib3.connectionpool [DEBUG ] Starting new HTTPS connection (1): api.multiqc.info:443 [2025-08-15 07:11:57,322] urllib3.connectionpool [DEBUG ] https://api.multiqc.info:443 "GET /version?version_multiqc=1.29&version_python=3.13.3&operating_system=Linux&is_docker=False&is_singularity=True&is_conda=True&is_ci=False&is_notebook=False&ai_summary=False&ai_summary_full=False&ai_provider=seqera HTTP/1.1" 200 178 [2025-08-15 07:11:57,323] multiqc.core.version_check [WARNING] MultiQC Version v1.30 now available! [2025-08-15 07:11:57,324] multiqc.core.version_check [DEBUG ] Latest MultiQC version is v1.30, released 2025-07-09 [2025-08-15 07:11:57,324] multiqc.multiqc [DEBUG ] Working dir : /gscratch/scrubbed/srlab/nxf.T8FnT7ppuP [2025-08-15 07:11:57,324] multiqc.multiqc [DEBUG ] Template : default [2025-08-15 07:11:57,324] multiqc.multiqc [DEBUG ] Command used: /usr/local/bin/multiqc --force --config multiqc_config.yml . [2025-08-15 07:11:57,324] multiqc.core.file_search [INFO ] Search path: /gscratch/scrubbed/srlab/nxf.T8FnT7ppuP [2025-08-15 07:11:57,326] multiqc.core.file_search [DEBUG ] Analysing modules: bismark, bases2fastq, cellranger_arc, cells2stats, custom_content, ccs, ngsderive, purple, conpair, isoseq, lima, peddy, percolator, haplocheck, somalier, methylqa, mosdepth, phantompeakqualtools, qualimap, bamdst, preseq, hifiasm, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, checkm, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, glimpse, gopeaks, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featurecounts, fgbio, dragen, dragen_fastqc, dedup, pbmarkdup, damageprofiler, mapdamage, biobambam2, jcvi, mtnucratio, picard, vep, bakta, prokka, checkm2, qc3C, nanoq, nanostat, samblaster, samtools, bamtools, sambamba, ngsbits, pairtools, sexdeterrmine, seqera_cli, eigenstratdatabasetools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, umicollapse, umitools, truvari, megahit, ganon, gtdbtk, bbmap, biscuit, diamond, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, hostile, cellranger, snpsplit, odgi, vg, pangolin, nextclade, freyja, humid, kat, leehom, librarian, nonpareil, adapterremoval, bbduk, clipandmerge, cutadapt, flexbar, sourmash, kaiju, kraken, malt, motus, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, sequali, filtlong, prinseqplusplus, pychopper, porechop, pycoqc, minionqc, anglerfish, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap, spaceranger, xenome, xengsort, metaphlan, seqwho, telseq, ataqv, mgikit, mosaicatcher, software_versions [2025-08-15 07:11:57,327] multiqc.core.file_search [DEBUG ] Search keys: adapterremoval, afterqc, anglerfish, ataqv, bakta, bamdst, bamtools, bases2fastq, bbduk, bbmap, bcftools, bcl2fastq, bclconvert, biobambam2, biobloomtools, biscuit, bismark, bowtie1, bowtie2, busco, bustools, ccs, cellranger, cellranger_arc, cells2stats, checkm, checkm2, checkqc, clipandmerge, clusterflow, conpair, custom_content, cutadapt, damageprofiler, dedup, deeptools, diamond, disambiguate, dragen, dragen_fastqc, eigenstratdatabasetools, fastp, fastq_screen, fastqc, featurecounts, fgbio, filtlong, flash, flexbar, freyja, ganon, gatk, gffcompare, glimpse, goleft_indexcov, gopeaks, gtdbtk, haplocheck, happy, hicexplorer, hicpro, hicup, hifiasm, hisat2, homer, hops, hostile, htseq, humid, interop, isoseq, ivar, jcvi, jellyfish, kaiju, kallisto, kat, kraken, leehom, librarian, lima, longranger, macs2, malt, mapdamage, megahit, metaphlan, methylqa, mgikit, minionqc, mirtop, mirtrace, mosaicatcher, mosdepth, motus, mtnucratio, multiqc_data, multivcfanalyzer, nanoq, nanostat, nextclade, ngsbits, ngsderive, nonpareil, odgi, optitype, pairtools, pangolin, pbmarkdup, peddy, percolator, phantompeakqualtools, picard, porechop, preseq, prinseqplusplus, prokka, purple, pychopper, pycoqc, qc3C, qorts, qualimap, quast, rna_seqc, rockhopper, rsem, rseqc, salmon, sambamba, samblaster, samtools, sargasso, seqera_cli, sequali, seqwho, seqyclean, sexdeterrmine, sickle, skewer, slamdunk, snippy, snpeff, snpsplit, software_versions, somalier, sortmerna, sourmash, spaceranger, stacks, star, supernova, telseq, theta2, tophat, trimmomatic, truvari, umicollapse, umitools, varscan2, vcftools, vep, verifybamid, vg, whatshap, xengsort, xenome [2025-08-15 07:12:10,099] multiqc.report [DEBUG ] Summary of files that were skipped by the search: |skipped_module_specific_max_filesize: 98|, |skipped_no_match: 38| [2025-08-15 07:12:10,100] multiqc.core.exec_modules [DEBUG ] Running module: bismark [2025-08-15 07:12:10,161] multiqc.report [DEBUG ] Wrote data file multiqc_bismark_alignment.txt [2025-08-15 07:12:10,162] multiqc.report [DEBUG ] Wrote data file multiqc_bismark_alignment.json [2025-08-15 07:12:10,163] multiqc.modules.bismark.bismark [INFO ] Found 32 alignment reports [2025-08-15 07:12:10,434] multiqc.report [DEBUG ] Wrote data file multiqc_bismark_dedup.txt [2025-08-15 07:12:10,434] multiqc.report [DEBUG ] Wrote data file multiqc_bismark_dedup.json [2025-08-15 07:12:10,434] multiqc.modules.bismark.bismark [INFO ] Found 32 dedup reports [2025-08-15 07:12:10,513] multiqc.report [DEBUG ] Wrote data file multiqc_bismark_methextract.txt [2025-08-15 07:12:10,513] multiqc.report [DEBUG ] Wrote data file multiqc_bismark_methextract.json [2025-08-15 07:12:10,513] multiqc.modules.bismark.bismark [INFO ] Found 32 methextract reports [2025-08-15 07:12:10,514] multiqc.plots.table_object [DEBUG ] Table key 'percent_chg_meth' not found in data for 'bismark-methylation-dp'. Skipping. Check for possible typos between data keys and header keys [2025-08-15 07:12:10,514] multiqc.plots.table_object [DEBUG ] Table key 'percent_chh_meth' not found in data for 'bismark-methylation-dp'. Skipping. Check for possible typos between data keys and header keys [2025-08-15 07:12:10,703] multiqc.base_module [DEBUG ] bismark: deleting attribute self.bismark_data [2025-08-15 07:12:10,703] multiqc.base_module [DEBUG ] bismark: deleting attribute self.bismark_mbias_data [2025-08-15 07:12:10,704] multiqc.core.exec_modules [DEBUG ] Running module: custom_content [2025-08-15 07:12:10,716] multiqc.core.special_case_modules.custom_content [INFO ] nf-core-methylseq-methods-description: Found 1 sample (html) [2025-08-15 07:12:10,716] multiqc.core.special_case_modules.custom_content [INFO ] nf-core-methylseq-summary: Found 1 sample (html) [2025-08-15 07:12:10,716] multiqc.core.exec_modules [DEBUG ] Running module: cutadapt [2025-08-15 07:12:10,796] multiqc.modules.cutadapt.cutadapt [INFO ] Found 64 reports [2025-08-15 07:12:10,797] multiqc.report [DEBUG ] Wrote data file multiqc_cutadapt.txt [2025-08-15 07:12:10,797] multiqc.report [DEBUG ] Wrote data file multiqc_cutadapt.json [2025-08-15 07:12:10,902] multiqc.base_module [DEBUG ] cutadapt: deleting attribute self.cutadapt_data [2025-08-15 07:12:10,902] multiqc.base_module [DEBUG ] cutadapt: deleting attribute self.cutadapt_length_counts [2025-08-15 07:12:10,903] multiqc.base_module [DEBUG ] cutadapt: deleting attribute self.cutadapt_length_exp [2025-08-15 07:12:10,903] multiqc.base_module [DEBUG ] cutadapt: deleting attribute self.cutadapt_length_obsexp [2025-08-15 07:12:10,903] multiqc.core.exec_modules [DEBUG ] Running module: fastqc [2025-08-15 07:12:10,930] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '01B_1_fastqc.zip' as already parsed '01B_1' [2025-08-15 07:12:10,939] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '01B_2_fastqc.zip' as already parsed '01B_2' [2025-08-15 07:12:10,949] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '02B_1_fastqc.zip' as already parsed '02B_1' [2025-08-15 07:12:10,958] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '02B_2_fastqc.zip' as already parsed '02B_2' [2025-08-15 07:12:10,967] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '03B_1_fastqc.zip' as already parsed '03B_1' [2025-08-15 07:12:10,977] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '03B_2_fastqc.zip' as already parsed '03B_2' [2025-08-15 07:12:10,986] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '06B_1_fastqc.zip' as already parsed '06B_1' [2025-08-15 07:12:10,995] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '06B_2_fastqc.zip' as already parsed '06B_2' [2025-08-15 07:12:11,004] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '08B_1_fastqc.zip' as already parsed '08B_1' [2025-08-15 07:12:11,013] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '08B_2_fastqc.zip' as already parsed '08B_2' [2025-08-15 07:12:11,023] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '09B_1_fastqc.zip' as already parsed '09B_1' [2025-08-15 07:12:11,032] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '09B_2_fastqc.zip' as already parsed '09B_2' [2025-08-15 07:12:11,042] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '13B_1_fastqc.zip' as already parsed '13B_1' [2025-08-15 07:12:11,051] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '13B_2_fastqc.zip' as already parsed '13B_2' [2025-08-15 07:12:11,061] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '17B_1_fastqc.zip' as already parsed '17B_1' [2025-08-15 07:12:11,070] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '17B_2_fastqc.zip' as already parsed '17B_2' [2025-08-15 07:12:11,079] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '21B_1_fastqc.zip' as already parsed '21B_1' [2025-08-15 07:12:11,088] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '21B_2_fastqc.zip' as already parsed '21B_2' [2025-08-15 07:12:11,097] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '22B_1_fastqc.zip' as already parsed '22B_1' [2025-08-15 07:12:11,106] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '22B_2_fastqc.zip' as already parsed '22B_2' [2025-08-15 07:12:11,116] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '23B_1_fastqc.zip' as already parsed '23B_1' [2025-08-15 07:12:11,124] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '23B_2_fastqc.zip' as already parsed '23B_2' [2025-08-15 07:12:11,133] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '24B_1_fastqc.zip' as already parsed '24B_1' [2025-08-15 07:12:11,143] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '24B_2_fastqc.zip' as already parsed '24B_2' [2025-08-15 07:12:11,152] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '31B_1_fastqc.zip' as already parsed '31B_1' [2025-08-15 07:12:11,161] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '31B_2_fastqc.zip' as already parsed '31B_2' [2025-08-15 07:12:11,169] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '33B_1_fastqc.zip' as already parsed '33B_1' [2025-08-15 07:12:11,179] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '33B_2_fastqc.zip' as already parsed '33B_2' [2025-08-15 07:12:11,188] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '35B_1_fastqc.zip' as already parsed '35B_1' [2025-08-15 07:12:11,197] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '35B_2_fastqc.zip' as already parsed '35B_2' [2025-08-15 07:12:11,206] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '36B_1_fastqc.zip' as already parsed '36B_1' [2025-08-15 07:12:11,215] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '36B_2_fastqc.zip' as already parsed '36B_2' [2025-08-15 07:12:11,224] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '44B_1_fastqc.zip' as already parsed '44B_1' [2025-08-15 07:12:11,233] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '44B_2_fastqc.zip' as already parsed '44B_2' [2025-08-15 07:12:11,242] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '45B_1_fastqc.zip' as already parsed '45B_1' [2025-08-15 07:12:11,251] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '45B_2_fastqc.zip' as already parsed '45B_2' [2025-08-15 07:12:11,260] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '46B_1_fastqc.zip' as already parsed '46B_1' [2025-08-15 07:12:11,270] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '46B_2_fastqc.zip' as already parsed '46B_2' [2025-08-15 07:12:11,279] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '49B_1_fastqc.zip' as already parsed '49B_1' [2025-08-15 07:12:11,287] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '49B_2_fastqc.zip' as already parsed '49B_2' [2025-08-15 07:12:11,296] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '51B_1_fastqc.zip' as already parsed '51B_1' [2025-08-15 07:12:11,305] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '51B_2_fastqc.zip' as already parsed '51B_2' [2025-08-15 07:12:11,314] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '53B_1_fastqc.zip' as already parsed '53B_1' [2025-08-15 07:12:11,324] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '53B_2_fastqc.zip' as already parsed '53B_2' [2025-08-15 07:12:11,333] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '55B_1_fastqc.zip' as already parsed '55B_1' [2025-08-15 07:12:11,342] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '55B_2_fastqc.zip' as already parsed '55B_2' [2025-08-15 07:12:11,351] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '60B_1_fastqc.zip' as already parsed '60B_1' [2025-08-15 07:12:11,360] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '60B_2_fastqc.zip' as already parsed '60B_2' [2025-08-15 07:12:11,369] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '63B_1_fastqc.zip' as already parsed '63B_1' [2025-08-15 07:12:11,378] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '63B_2_fastqc.zip' as already parsed '63B_2' [2025-08-15 07:12:11,387] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '64B_1_fastqc.zip' as already parsed '64B_1' [2025-08-15 07:12:11,396] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '64B_2_fastqc.zip' as already parsed '64B_2' [2025-08-15 07:12:11,405] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '66B_1_fastqc.zip' as already parsed '66B_1' [2025-08-15 07:12:11,414] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '66B_2_fastqc.zip' as already parsed '66B_2' [2025-08-15 07:12:11,423] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '67B_1_fastqc.zip' as already parsed '67B_1' [2025-08-15 07:12:11,432] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '67B_2_fastqc.zip' as already parsed '67B_2' [2025-08-15 07:12:11,441] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '68B_1_fastqc.zip' as already parsed '68B_1' [2025-08-15 07:12:11,450] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '68B_2_fastqc.zip' as already parsed '68B_2' [2025-08-15 07:12:11,460] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '71B_1_fastqc.zip' as already parsed '71B_1' [2025-08-15 07:12:11,469] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '71B_2_fastqc.zip' as already parsed '71B_2' [2025-08-15 07:12:11,478] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '72B_1_fastqc.zip' as already parsed '72B_1' [2025-08-15 07:12:11,487] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '72B_2_fastqc.zip' as already parsed '72B_2' [2025-08-15 07:12:11,496] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '74B_1_fastqc.zip' as already parsed '74B_1' [2025-08-15 07:12:11,505] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '74B_2_fastqc.zip' as already parsed '74B_2' [2025-08-15 07:12:11,505] multiqc.modules.fastqc.fastqc [INFO ] Found 64 reports [2025-08-15 07:12:11,970] multiqc.plots.plot [DEBUG ] Plot fastqc_adapter_content_plot has 192 samples > config.plots_defer_loading_numseries=100, will defer render [2025-08-15 07:12:12,106] multiqc.report [DEBUG ] Wrote data file multiqc_fastqc.txt [2025-08-15 07:12:12,108] multiqc.report [DEBUG ] Wrote data file multiqc_fastqc.json [2025-08-15 07:12:12,110] multiqc.base_module [DEBUG ] fastqc: deleting attribute self.order_of_duplication_levels [2025-08-15 07:12:12,110] multiqc.base_module [DEBUG ] fastqc: deleting attribute self.status_colours [2025-08-15 07:12:12,110] multiqc.core.software_versions [DEBUG ] Reading software versions from config.software_versions [2025-08-15 07:12:12,110] multiqc.core.software_versions [DEBUG ] Reading software versions settings from: 357/nf_core_methylseq_software_mqc_versions.yml [2025-08-15 07:12:12,115] multiqc.report [DEBUG ] Wrote data file multiqc_software_versions.txt [2025-08-15 07:12:12,115] multiqc.core.order_modules_and_sections [DEBUG ] config.report_section_order: module 'software_versions' not found. [2025-08-15 07:12:12,115] multiqc.core.write_results [INFO ] Rendering plots. Export plots to formats png, svg, pdf is requested, so it might take a while. To disable plot export, set `export_plots: false` in config, or remove the `--export-plots` command line flag [2025-08-15 07:12:28,829] multiqc.plots.table_object [DEBUG ] Table key 'percent_chg_meth' not found in data for 'general_stats_table'. Skipping. Check for possible typos between data keys and header keys [2025-08-15 07:12:28,829] multiqc.plots.table_object [DEBUG ] Table key 'percent_chh_meth' not found in data for 'general_stats_table'. Skipping. Check for possible typos between data keys and header keys [2025-08-15 07:12:29,012] multiqc.report [DEBUG ] Wrote data file multiqc_general_stats.txt [2025-08-15 07:12:29,013] multiqc.report [DEBUG ] Wrote data file multiqc_general_stats.json [2025-08-15 07:12:29,252] multiqc.core.write_results [DEBUG ] Exporting plot data to files [2025-08-15 07:12:29,252] multiqc.report [DEBUG ] Wrote data file bismark_alignment.txt [2025-08-15 07:12:29,252] multiqc.report [DEBUG ] Wrote data file bismark_deduplication.txt [2025-08-15 07:12:29,253] multiqc.report [DEBUG ] Wrote data file bismark_strand_alignment.txt [2025-08-15 07:12:29,253] multiqc.report [DEBUG ] Wrote data file bismark-methylation-dp.txt [2025-08-15 07:12:29,258] multiqc.report [DEBUG ] Wrote data file bismark_mbias_CpG_R1.txt [2025-08-15 07:12:29,263] multiqc.report [DEBUG ] Wrote data file bismark_mbias_CHG_R1.txt [2025-08-15 07:12:29,268] multiqc.report [DEBUG ] Wrote data file bismark_mbias_CHH_R1.txt [2025-08-15 07:12:29,276] multiqc.report [DEBUG ] Wrote data file bismark_mbias_CpG_R2.txt [2025-08-15 07:12:29,281] multiqc.report [DEBUG ] Wrote data file bismark_mbias_CHG_R2.txt [2025-08-15 07:12:29,287] multiqc.report [DEBUG ] Wrote data file bismark_mbias_CHH_R2.txt [2025-08-15 07:12:29,287] multiqc.report [DEBUG ] Wrote data file cutadapt_filtered_reads_plot.txt [2025-08-15 07:12:29,295] multiqc.report [DEBUG ] Wrote data file cutadapt_trimmed_sequences_plot_3_Counts.txt [2025-08-15 07:12:29,307] multiqc.report [DEBUG ] Wrote data file cutadapt_trimmed_sequences_plot_3_Obs_Exp.txt [2025-08-15 07:12:29,308] multiqc.report [DEBUG ] Wrote data file fastqc_sequence_counts_plot.txt [2025-08-15 07:12:29,312] multiqc.report [DEBUG ] Wrote data file fastqc_per_base_sequence_quality_plot.txt [2025-08-15 07:12:29,314] multiqc.report [DEBUG ] Wrote data file fastqc_per_sequence_quality_scores_plot.txt [2025-08-15 07:12:29,325] multiqc.report [DEBUG ] Wrote data file fastqc_per_sequence_gc_content_plot_Percentages.txt [2025-08-15 07:12:29,332] multiqc.report [DEBUG ] Wrote data file fastqc_per_sequence_gc_content_plot_Counts.txt [2025-08-15 07:12:29,336] multiqc.report [DEBUG ] Wrote data file fastqc_per_base_n_content_plot.txt [2025-08-15 07:12:29,338] multiqc.report [DEBUG ] Wrote data file fastqc_sequence_duplication_levels_plot.txt [2025-08-15 07:12:29,338] multiqc.report [DEBUG ] Wrote data file fastqc_top_overrepresented_sequences_table.txt [2025-08-15 07:12:29,349] multiqc.report [DEBUG ] Wrote data file fastqc_adapter_content_plot.txt [2025-08-15 07:12:29,350] multiqc.report [DEBUG ] Wrote data file fastqc-status-check-heatmap.txt [2025-08-15 07:12:29,350] multiqc.core.write_results [DEBUG ] Moving data file from '/tmp/tmplksrduk0/multiqc_data' to '/gscratch/scrubbed/srlab/nxf.T8FnT7ppuP/multiqc_data' [2025-08-15 07:12:30,108] multiqc.core.write_results [INFO ] Data : multiqc_data [2025-08-15 07:12:30,184] multiqc.core.write_results [DEBUG ] Compressing plot data [2025-08-15 07:12:30,674] multiqc.core.write_results [INFO ] Report : multiqc_report.html [2025-08-15 07:12:30,674] multiqc.core.write_results [DEBUG ] Moving plots directory from '/tmp/tmplksrduk0/multiqc_plots' to '/gscratch/scrubbed/srlab/nxf.T8FnT7ppuP/multiqc_plots' [2025-08-15 07:12:30,804] multiqc.core.write_results [INFO ] Plots : multiqc_plots [2025-08-15 07:12:30,804] multiqc.core.write_results [DEBUG ] Report HTML written to /gscratch/scrubbed/srlab/nxf.T8FnT7ppuP/multiqc_report.html