Module	Section	Sample Name	Source
Bismark	alignment	LCo_BSr1.LCo_BSr1_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/45/LCo_BSr1.LCo_BSr1_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	LCo_BSr2.LCo_BSr2_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/48/LCo_BSr2.LCo_BSr2_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	LCo_BSr3.LCo_BSr3_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/50/LCo_BSr3.LCo_BSr3_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	LYa_BSr1.LYa_BSr1_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/46/LYa_BSr1.LYa_BSr1_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	LYa_BSr2.LYa_BSr2_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/47/LYa_BSr2.LYa_BSr2_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	LYa_BSr3.LYa_BSr3_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/49/LYa_BSr3.LYa_BSr3_1_val_1_bismark_bt2_PE_report.txt
Bismark	deduplication	LCo_BSr1.LCo_BSr1_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/39/LCo_BSr1.LCo_BSr1_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	LCo_BSr2.LCo_BSr2_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/42/LCo_BSr2.LCo_BSr2_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	LCo_BSr3.LCo_BSr3_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/44/LCo_BSr3.LCo_BSr3_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	LYa_BSr1.LYa_BSr1_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/40/LYa_BSr1.LYa_BSr1_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	LYa_BSr2.LYa_BSr2_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/41/LYa_BSr2.LYa_BSr2_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	LYa_BSr3.LYa_BSr3_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/43/LYa_BSr3.LYa_BSr3_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	methylation_extraction	LCo_BSr1.LCo_BSr1_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/51/LCo_BSr1.LCo_BSr1_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	LCo_BSr2.LCo_BSr2_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/53/LCo_BSr2.LCo_BSr2_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	LCo_BSr3.LCo_BSr3_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/54/LCo_BSr3.LCo_BSr3_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	LYa_BSr1.LYa_BSr1_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/55/LYa_BSr1.LYa_BSr1_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	LYa_BSr2.LYa_BSr2_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/52/LYa_BSr2.LYa_BSr2_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	LYa_BSr3.LYa_BSr3_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/56/LYa_BSr3.LYa_BSr3_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	m_bias	LCo_BSr1.LCo_BSr1_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/57/LCo_BSr1.LCo_BSr1_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	LCo_BSr2.LCo_BSr2_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/59/LCo_BSr2.LCo_BSr2_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	LCo_BSr3.LCo_BSr3_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/60/LCo_BSr3.LCo_BSr3_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	LYa_BSr1.LYa_BSr1_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/61/LYa_BSr1.LYa_BSr1_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	LYa_BSr2.LYa_BSr2_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/58/LYa_BSr2.LYa_BSr2_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	LYa_BSr3.LYa_BSr3_1_val_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/62/LYa_BSr3.LYa_BSr3_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Cutadapt	all_sections	LCo_BSr1_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/29/LCo_BSr1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	LCo_BSr1_2	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/30/LCo_BSr1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	LCo_BSr2_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/27/LCo_BSr2_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	LCo_BSr2_2	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/28/LCo_BSr2_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	LCo_BSr3_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/31/LCo_BSr3_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	LCo_BSr3_2	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/32/LCo_BSr3_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	LYa_BSr1_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/35/LYa_BSr1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	LYa_BSr1_2	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/36/LYa_BSr1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	LYa_BSr2_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/33/LYa_BSr2_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	LYa_BSr2_2	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/34/LYa_BSr2_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	LYa_BSr3_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/37/LYa_BSr3_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	LYa_BSr3_2	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/38/LYa_BSr3_2.fastq.gz_trimming_report.txt
FastQC	all_sections	LCo_BSr1_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/3/LCo_BSr1_1_fastqc.zip
FastQC	all_sections	LCo_BSr1_2	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/4/LCo_BSr1_2_fastqc.zip
FastQC	all_sections	LCo_BSr2_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/17/LCo_BSr2_1_fastqc.zip
FastQC	all_sections	LCo_BSr2_2	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/6/LCo_BSr2_2_fastqc.zip
FastQC	all_sections	LCo_BSr3_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/7/LCo_BSr3_1_fastqc.zip
FastQC	all_sections	LCo_BSr3_2	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/20/LCo_BSr3_2_fastqc.zip
FastQC	all_sections	LYa_BSr1_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/21/LYa_BSr1_1_fastqc.zip
FastQC	all_sections	LYa_BSr1_2	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/22/LYa_BSr1_2_fastqc.zip
FastQC	all_sections	LYa_BSr2_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/13/LYa_BSr2_1_fastqc.zip
FastQC	all_sections	LYa_BSr2_2	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/14/LYa_BSr2_2_fastqc.zip
FastQC	all_sections	LYa_BSr3_1	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/11/LYa_BSr3_1_fastqc.zip
FastQC	all_sections	LYa_BSr3_2	/gscratch/scrubbed/srlab/nxf.HBd54uoKze/24/LYa_BSr3_2_fastqc.zip