File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
LCo_BSr1.LCo_BSr1_1_val_1_bismark_bt2_pe.bam	99884564	61436085	22201915	16246560	4	3289145	58146940	2119450506	35196066	203705615	1705768	329582619	7891884	1541368554
LYa_BSr3.LYa_BSr3_1_val_1_bismark_bt2_pe.bam	99856232	61052677	22679982	16123569	4	2257470	58795207	2166472197	35758322	211349348	1764483	339593624	8106626	1569899794
LCo_BSr2.LCo_BSr2_1_val_1_bismark_bt2_pe.bam	99855242	61120556	22331344	16403336	6	2880564	58239992	2115541782	36388793	202358004	1675998	327424805	7754294	1539939888
LYa_BSr1.LYa_BSr1_1_val_1_bismark_bt2_pe.bam	99886071	60497907	23941776	15446381	7	3483592	57014315	2135696290	36329200	202817510	1678018	332038594	7741453	1555091515
LYa_BSr2.LYa_BSr2_1_val_1_bismark_bt2_pe.bam	99854870	60924254	23161141	15769473	2	2613117	58311137	2156959892	36863877	205374781	1721067	336306233	7915066	1568778868
LCo_BSr3.LCo_BSr3_1_val_1_bismark_bt2_pe.bam	99859420	61111039	22243894	16504482	5	2925054	58185985	2131143539	35315029	205965771	1787409	331486947	8276126	1548312257