LYa_BSr2_pe.deduplicated.bam

Parameters used to extract methylation information:
Bismark Extractor Version: v0.24.2
Bismark result file: paired-end (SAM format)
Output specified: comprehensive
No overlapping methylation calls specified
Methylation in CHG and CHH context will be merged into "non-CpG context" output


Processed 57959870 lines in total
Total number of methylation call strings processed: 115919740

Final Cytosine Methylation Report
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Total number of C's analysed:	2236786038

Total methylated C's in CpG context:	42551975
Total methylated C's in CHG context:	9112036
Total methylated C's in CHH context:	44751518

Total C to T conversions in CpG context:	207685727
Total C to T conversions in CHG context:	340328383
Total C to T conversions in CHH context:	1592356399

C methylated in CpG context:	17.0%
C methylated in non-CpG context:	2.7%