chr Chromosome_1 (173399226 bp)
chr Chromosome_2 (140585540 bp)
chr Chromosome_3 (154669058 bp)
chr Chromosome_4 (155271769 bp)
chr Chromosome_5 (143711894 bp)
chr Chromosome_6 (146112803 bp)
chr Chromosome_7 (140080477 bp)
chr Chromosome_8 (134086722 bp)
chr Chromosome_9 (133209816 bp)
chr Chromosome_10 (132883123 bp)
chr Chromosome_11 (131458407 bp)
chr Chromosome_12 (123051472 bp)
chr Chromosome_13 (113386651 bp)
chr Chromosome_14 (117416392 bp)

Number of paired-end alignments with a unique best hit:	60093968
Mapping efficiency:	60.1%

Sequence pairs with no alignments under any condition:	25665777
Sequence pairs did not map uniquely:	14240255
Sequence pairs which were discarded because genomic sequence could not be extracted:	6

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	30100637	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	29993325	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Sample LYa_BSr1 processed successfully.