nextflow run nf-core/methylseq \
-c /gscratch/scrubbed/sr320/github/project-chilean-mussel/code/11.config \
--input /gscratch/scrubbed/sr320/github/project-chilean-mussel/code/11.samplesheet.csv \
--outdir /gscratch/scrubbed/sr320/github/project-chilean-mussel/output/11-nextflow \
--fasta /gscratch/scrubbed/sr320/github/project-chilean-mussel/data/Mchi/MchilensisGenomeV1.fa \
--clip_r2 10 \
-resume \
-with-trace \
-with-report nf_report.html \
-with-timeline nf_timeline.html \
--nomeseq