---
title: "05-genome-prep-klone"
output: html_document
---

```
# Directories and programs
bismark_dir=""
bowtie2_dir="/home/shared/bowtie2-2.4.4-linux-x86_64/"
genome_folder="../data/Mchi"

${bismark_dir}/bismark_genome_preparation \
--verbose \
--parallel 6 \
${genome_folder}
```

