Module	Section	Sample Name	Source
Bismark	alignment	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/36/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/33/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/35/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Male_1.Caligus_Male_1_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/34/Caligus_Male_1.Caligus_Male_1_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Male_2.Caligus_Male_2_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/37/Caligus_Male_2.Caligus_Male_2_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Male_3.Caligus_Male_3_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/38/Caligus_Male_3.Caligus_Male_3_1_val_1_bismark_bt2_PE_report.txt
Bismark	deduplication	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/30/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/27/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/29/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Male_1.Caligus_Male_1_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/28/Caligus_Male_1.Caligus_Male_1_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Male_2.Caligus_Male_2_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/31/Caligus_Male_2.Caligus_Male_2_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Male_3.Caligus_Male_3_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/32/Caligus_Male_3.Caligus_Male_3_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	methylation_extraction	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/43/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/40/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/41/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Male_1.Caligus_Male_1_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/39/Caligus_Male_1.Caligus_Male_1_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Male_2.Caligus_Male_2_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/42/Caligus_Male_2.Caligus_Male_2_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Male_3.Caligus_Male_3_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/44/Caligus_Male_3.Caligus_Male_3_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	m_bias	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/49/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/46/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/47/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Male_1.Caligus_Male_1_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/45/Caligus_Male_1.Caligus_Male_1_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Male_2.Caligus_Male_2_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/48/Caligus_Male_2.Caligus_Male_2_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Male_3.Caligus_Male_3_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/50/Caligus_Male_3.Caligus_Male_3_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Cutadapt	all_sections	Caligus_Female_11_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/23/Caligus_Female_11_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_11_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/24/Caligus_Female_11_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_22_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/17/Caligus_Female_22_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_22_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/18/Caligus_Female_22_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_33_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/25/Caligus_Female_33_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_33_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/26/Caligus_Female_33_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_1_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/15/Caligus_Male_1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_1_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/16/Caligus_Male_1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_2_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/21/Caligus_Male_2_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_2_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/22/Caligus_Male_2_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_3_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/19/Caligus_Male_3_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_3_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/20/Caligus_Male_3_2.fastq.gz_trimming_report.txt
FastQC	all_sections	Caligus_Female_11_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/7/Caligus_Female_11_1_fastqc.zip
FastQC	all_sections	Caligus_Female_11_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/8/Caligus_Female_11_2_fastqc.zip
FastQC	all_sections	Caligus_Female_22_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/13/Caligus_Female_22_1_fastqc.zip
FastQC	all_sections	Caligus_Female_22_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/14/Caligus_Female_22_2_fastqc.zip
FastQC	all_sections	Caligus_Female_33_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/3/Caligus_Female_33_1_fastqc.zip
FastQC	all_sections	Caligus_Female_33_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/4/Caligus_Female_33_2_fastqc.zip
FastQC	all_sections	Caligus_Male_1_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/9/Caligus_Male_1_1_fastqc.zip
FastQC	all_sections	Caligus_Male_1_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/10/Caligus_Male_1_2_fastqc.zip
FastQC	all_sections	Caligus_Male_2_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/11/Caligus_Male_2_1_fastqc.zip
FastQC	all_sections	Caligus_Male_2_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/12/Caligus_Male_2_2_fastqc.zip
FastQC	all_sections	Caligus_Male_3_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/5/Caligus_Male_3_1_fastqc.zip
FastQC	all_sections	Caligus_Male_3_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ttt9pn4gB7/6/Caligus_Male_3_2_fastqc.zip