Module	Section	Sample Name	Source
Bismark	alignment	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/28/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/27/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/30/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Male_1.Caligus_Male_1_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/31/Caligus_Male_1.Caligus_Male_1_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Male_2.Caligus_Male_2_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/29/Caligus_Male_2.Caligus_Male_2_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Male_3.Caligus_Male_3_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/32/Caligus_Male_3.Caligus_Male_3_1_val_1_bismark_bt2_PE_report.txt
Bismark	deduplication	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/34/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/33/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/36/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Male_1.Caligus_Male_1_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/37/Caligus_Male_1.Caligus_Male_1_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Male_2.Caligus_Male_2_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/35/Caligus_Male_2.Caligus_Male_2_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Male_3.Caligus_Male_3_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/38/Caligus_Male_3.Caligus_Male_3_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	methylation_extraction	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/46/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/45/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/48/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Male_1.Caligus_Male_1_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/49/Caligus_Male_1.Caligus_Male_1_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Male_2.Caligus_Male_2_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/47/Caligus_Male_2.Caligus_Male_2_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Male_3.Caligus_Male_3_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/50/Caligus_Male_3.Caligus_Male_3_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	m_bias	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/40/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/39/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/42/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Male_1.Caligus_Male_1_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/43/Caligus_Male_1.Caligus_Male_1_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Male_2.Caligus_Male_2_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/41/Caligus_Male_2.Caligus_Male_2_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Male_3.Caligus_Male_3_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/44/Caligus_Male_3.Caligus_Male_3_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Cutadapt	all_sections	Caligus_Female_11_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/17/Caligus_Female_11_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_11_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/18/Caligus_Female_11_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_22_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/15/Caligus_Female_22_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_22_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/16/Caligus_Female_22_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_33_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/21/Caligus_Female_33_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_33_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/22/Caligus_Female_33_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_1_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/23/Caligus_Male_1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_1_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/24/Caligus_Male_1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_2_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/19/Caligus_Male_2_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_2_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/20/Caligus_Male_2_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_3_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/25/Caligus_Male_3_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_3_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/26/Caligus_Male_3_2.fastq.gz_trimming_report.txt
FastQC	all_sections	Caligus_Female_11_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/13/Caligus_Female_11_1_fastqc.zip
FastQC	all_sections	Caligus_Female_11_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/14/Caligus_Female_11_2_fastqc.zip
FastQC	all_sections	Caligus_Female_22_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/5/Caligus_Female_22_1_fastqc.zip
FastQC	all_sections	Caligus_Female_22_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/6/Caligus_Female_22_2_fastqc.zip
FastQC	all_sections	Caligus_Female_33_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/3/Caligus_Female_33_1_fastqc.zip
FastQC	all_sections	Caligus_Female_33_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/4/Caligus_Female_33_2_fastqc.zip
FastQC	all_sections	Caligus_Male_1_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/7/Caligus_Male_1_1_fastqc.zip
FastQC	all_sections	Caligus_Male_1_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/8/Caligus_Male_1_2_fastqc.zip
FastQC	all_sections	Caligus_Male_2_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/11/Caligus_Male_2_1_fastqc.zip
FastQC	all_sections	Caligus_Male_2_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/12/Caligus_Male_2_2_fastqc.zip
FastQC	all_sections	Caligus_Male_3_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/9/Caligus_Male_3_1_fastqc.zip
FastQC	all_sections	Caligus_Male_3_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.5QAkWo4dhf/10/Caligus_Male_3_2_fastqc.zip