File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_pe.bam	54154659	26570917	21047909	6535830	3	1464554	25106363	838662352	411226	106263874	378847	104756218	2361639	624490548
Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_pe.bam	54155528	26571186	21048117	6536222	3	1465694	25105492	838578454	411166	106245252	378730	104733421	2360679	624449206
Caligus_Male_2.Caligus_Male_2_1_val_1_bismark_bt2_pe.bam	54734219	27144310	20173716	7416188	5	1176811	25967499	772570867	409030	98504698	389845	96745288	2410097	574111909
Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_pe.bam	54154516	26571360	21048123	6535029	4	1465271	25106089	838634319	411940	106272331	379372	104743873	2361090	624465713
Caligus_Male_1.Caligus_Male_1_1_val_1_bismark_bt2_pe.bam	54734215	27140101	20176121	7417990	3	1176575	25963526	772474621	408852	98494746	389979	96736418	2410372	574034254
Caligus_Male_3.Caligus_Male_3_1_val_1_bismark_bt2_pe.bam	55729374	27634086	20543613	7551672	3	1218611	26415475	785869513	416170	100202972	396382	98406766	2452333	583994890