\n[Run 4] score_min=L,0,-0.8 -> /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-scoremin-L0_08 N E X T F L O W ~ version 25.04.6 Launching `https://github.com/nf-core/methylseq` [golden_perlman] DSL2 - revision: db60bfe1f0 [master] ------------------------------------------------------ ,--./,-. ___ __ __ __ ___ /,-._.--~' |\ | |__ __ / ` / \ |__) |__ } { | \| | \__, \__/ | \ |___ \`-._,-`-, `._,._,' nf-core/methylseq 4.1.0 ------------------------------------------------------ Input/output options input : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/code/05.samplesheet.csv outdir : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-scoremin-L0_08 Reference genome options fasta : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/data/GCA_013387185.1_ASM1338718v1_genomic.fa Bismark options nomeseq : true Institutional config options config_profile_description: UW Hyak Roberts labs cluster profile provided by nf-core/configs. config_profile_contact : Steven Roberts config_profile_url : https://faculty.washington.edu/sr320/ Generic options trace_report_suffix : 2025-08-30_23-49-05 Core Nextflow options revision : master runName : golden_perlman containerEngine : singularity launchDir : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-nextflow-minscore workDir : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-nextflow-minscore/work projectDir : /mmfs1/gscratch/scrubbed/sr320/.nextflow/assets/nf-core/methylseq userName : sr320 profile : standard configFiles : /mmfs1/gscratch/scrubbed/sr320/.nextflow/assets/nf-core/methylseq/nextflow.config, /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/code/05.config !! Only displaying parameters that differ from the pipeline defaults !! ------------------------------------------------------* The pipeline https://doi.org/10.5281/zenodo.1343417 * The nf-core framework https://doi.org/10.1038/s41587-020-0439-x * Software dependencies https://github.com/nf-core/methylseq/blob/master/CITATIONS.md WARN: The following invalid input values have been detected: * --score_min: L,0,-0.8 * --subset_reads: 100000 * --score_min_values: ["L,0,-0.2","L,0,-0.4","L,0,-0.6","L,0,-0.8"] [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [- ] NFC…A_INDEX_BISMARK_BWAMETH:BISMARK_GENOMEPREPARATION - [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [- ] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC - [- ] NFCORE_METHYLSEQ:METHYLSEQ:TRIMGALORE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [- ] NFC…A_INDEX_BISMARK_BWAMETH:BISMARK_GENOMEPREPARATION - [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [- ] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC - [- ] NFCORE_METHYLSEQ:METHYLSEQ:TRIMGALORE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [6b/32f883] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Male_3) | 4 of 4, cached: 4 [16/b8863e] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_3) | 4 of 4, cached: 4 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (1) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [9d/173785] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (2) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (3) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (4) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [39/8a382a] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (5) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [59/24db37] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (6) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [1e/92fec2] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (6) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [1e/92fec2] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (6) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [1e/92fec2] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (6) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [59/24db37] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 1 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (7) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [59/24db37] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 1 of 6 [6a/32adf9] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 0 of 1 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (7) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [1e/92fec2] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 2 of 6 [6a/32adf9] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 0 of 2 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (8) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [1e/92fec2] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 2 of 6 [b7/c2556b] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 0 of 2 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (8) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [1e/92fec2] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 2 of 6 [b7/c2556b] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 0 of 2 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (8) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [1e/92fec2] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 2 of 6 [b7/c2556b] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 0 of 2 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (8) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [39/8a382a] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 3 of 6 [b7/c2556b] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 0 of 2 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (8) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [39/8a382a] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 3 of 6 [b7/c2556b] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 0 of 3 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (9) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [39/8a382a] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 3 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 0 of 3 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (9) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [39/8a382a] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 3 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 0 of 3 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (9) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [9d/173785] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 4 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 0 of 4 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (10) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [9d/173785] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 4 of 6 [39/e8b27a] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 0 of 4 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (10) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [9d/173785] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 4 of 6 [39/e8b27a] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 0 of 4 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (12) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [9d/173785] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 4 of 6 [6a/32adf9] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 1 of 4 [f5/b113e2] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 0 of 1 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [48/559b96] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 0 of 1 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (13) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [9d/173785] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 4 of 6 [b7/c2556b] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 2 of 4 [9e/bfb678] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 2 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [48/559b96] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (14) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [9d/173785] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 4 of 6 [b7/c2556b] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 2 of 4 [9e/bfb678] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 2 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [1a/7bbd7d] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (14) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [b7/c2556b] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 2 of 5 [9e/bfb678] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 2 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [1a/7bbd7d] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (15) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [4e/5e2ae4] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 2 of 5 [9e/bfb678] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 2 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [1a/7bbd7d] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (15) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [4e/5e2ae4] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 2 of 5 [9e/bfb678] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 2 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [1a/7bbd7d] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (15) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [4e/5e2ae4] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 2 of 5 [9e/bfb678] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 2 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [1a/7bbd7d] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (15) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [4e/5e2ae4] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 2 of 5 [9e/bfb678] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 2 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [1a/7bbd7d] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (16) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [4e/5e2ae4] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 2 of 5 [f5/b113e2] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 1 of 2 [e1/38cbd5] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 0 of 1 [1a/7bbd7d] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (16) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 3 of 5 [f5/b113e2] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 1 of 3 [e1/38cbd5] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 0 of 1 [1a/7bbd7d] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (17) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 3 of 5 [f5/b113e2] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 1 of 3 [e1/38cbd5] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 0 of 1 [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (18) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 3 of 5 [58/87723f] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 1 of 3 [e1/38cbd5] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 0 of 1 [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (18) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 3 of 5 [9e/bfb678] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 2 of 3 [e1/38cbd5] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 0 of 2 [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (19) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 3 of 5 [9e/bfb678] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 2 of 3 [3c/7e3600] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 0 of 2 [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (19) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 3 of 5 [9e/bfb678] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 2 of 3 [3c/7e3600] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 0 of 2 [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (19) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 3 of 5 [9e/bfb678] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 2 of 3 [3c/7e3600] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 0 of 2 [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (19) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 3 of 5 [9e/bfb678] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 2 of 3 [3c/7e3600] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 1 of 2 [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (19) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 3 of 5 [9e/bfb678] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 2 of 3 [e1/38cbd5] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 2 of 2 [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (19) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 3 of 5 [9e/bfb678] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 2 of 3 [e1/38cbd5] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 2 of 3 [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (20) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 3 of 5 [58/87723f] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 3 of 3 [fc/d2c697] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 2 of 3 [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (20) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 3 of 5 [58/87723f] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 3 of 3 [fc/d2c697] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 2 of 3 [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (20) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [90/244429] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 3 of 5 [58/87723f] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 3 of 3 [fc/d2c697] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 3 of 3 [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (20) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [39/e8b27a] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 4 of 5 [58/87723f] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 3 of 4 [fc/d2c697] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 3 of 3 [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (21) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [39/e8b27a] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 4 of 5 [07/331ea0] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 3 of 4 [fc/d2c697] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 3 of 3 [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (22) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [39/e8b27a] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 4 of 5 [07/331ea0] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 3 of 4 [fc/d2c697] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 3 of 3 [35/d3b777] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (22) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [39/e8b27a] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 4 of 5 [07/331ea0] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 3 of 4 [fc/d2c697] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 3 of 3 [35/d3b777] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (22) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [4e/5e2ae4] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 5 of 5 [07/331ea0] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 3 of 5 [fc/d2c697] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 3 of 3 [35/d3b777] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (24) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [4e/5e2ae4] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 5 of 5 [e3/3fc7a6] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 3 of 5 [fc/d2c697] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 3 of 3 [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (24) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [4e/5e2ae4] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 5 of 5 [e3/3fc7a6] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 3 of 5 [fc/d2c697] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 3 of 3 [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (25) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [4e/5e2ae4] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 5 of 5 [07/331ea0] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 4 of 5 [fd/ff0d99] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 3 of 4 [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (25) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [4e/5e2ae4] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 5 of 5 [07/331ea0] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 4 of 5 [fd/ff0d99] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 3 of 4 [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (25) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [4e/5e2ae4] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 5 of 5 [07/331ea0] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 4 of 5 [fd/ff0d99] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 4 of 4 [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (25) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [4e/5e2ae4] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 5 of 5 [e3/3fc7a6] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 5 of 5 [fd/ff0d99] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 4 of 5 [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (26) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [de/ea76b4] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [4e/5e2ae4] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 5 of 5 [e3/3fc7a6] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 5 of 5 [5f/337eb9] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 4 of 5 [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (26) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [4e/5e2ae4] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 5 of 6 [e3/3fc7a6] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 5 of 5 [5f/337eb9] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 4 of 5 [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (27) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [e3/3fc7a6] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 5 of 5 [5f/337eb9] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 4 of 5 [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (27) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [e3/3fc7a6] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 5 of 5 [5f/337eb9] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 4 of 5 [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (27) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [e3/3fc7a6] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 5 of 5 [5f/337eb9] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 5 of 5 [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (28) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [e3/3fc7a6] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 5 of 6 [5f/337eb9] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 5 of 5 [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (29) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 5 of 6 [5f/337eb9] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 5 of 5 [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (29) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 5 of 6 [5f/337eb9] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 5 of 5 [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (30) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 5 of 6 [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (30) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 5 of 6 [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (30) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (31) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [1a/7bbd7d] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 1 of 6 [ce/7a00c1] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT | 0 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (32) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [1a/7bbd7d] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 1 of 6 [ce/7a00c1] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [8f/91957e] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 0 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (32) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [1a/7bbd7d] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 1 of 6 [ce/7a00c1] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [8f/91957e] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 0 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (32) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [1a/7bbd7d] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 1 of 6 [ce/7a00c1] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [8f/91957e] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 1 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (32) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 2 of 6 [ce/7a00c1] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 2 [8f/91957e] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 1 of 2 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (34) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 2 of 6 [d8/305541] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 0 of 2 [67/005982] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 1 of 2 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (34) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [c2/dcb97e] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 2 of 6 [d8/305541] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 0 of 2 [67/005982] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 2 of 2 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (34) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [48/559b96] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 3 of 6 [d8/305541] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 0 of 3 [67/005982] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 2 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (36) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [48/559b96] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 3 of 6 [43/268ed7] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 0 of 3 [ce/361a24] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_22) | 2 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (36) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [48/559b96] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 3 of 6 [43/268ed7] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 0 of 3 [ce/361a24] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_22) | 2 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (36) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [48/559b96] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 3 of 6 [43/268ed7] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 0 of 3 [ce/361a24] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_22) | 3 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (36) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [35/d3b777] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 4 of 6 [43/268ed7] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 0 of 4 [ce/361a24] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_22) | 3 of 4 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (38) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [35/d3b777] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 4 of 6 [76/b9abe5] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 0 of 4 [aa/893fba] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 3 of 4 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (38) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [35/d3b777] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 4 of 6 [76/b9abe5] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 0 of 4 [aa/893fba] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 4 of 4 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (38) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 5 of 6 [76/b9abe5] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 0 of 5 [aa/893fba] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 4 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 5 of 6 [7c/b399a8] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 0 of 5 [0f/75c17e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 4 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 5 of 6 [d8/305541] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 1 of 5 [0f/75c17e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 4 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 5 of 6 [d8/305541] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 1 of 5 [0f/75c17e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 4 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 5 of 6 [d8/305541] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 1 of 5 [0f/75c17e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 5 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 5 of 6 [ce/7a00c1] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 2 of 5 [0f/75c17e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 5 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 5 of 6 [43/268ed7] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 3 of 5 [0f/75c17e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 5 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 5 of 6 [43/268ed7] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 3 of 5 [0f/75c17e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 5 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - WARN: [SLURM] queue (ckpt-all) status cannot be fetched - cmd executed: squeue --noheader -o %i %t -t all -p ckpt-all -u sr320 - exit status : 1 - output : slurm_load_jobs error: Socket timed out on send/recv operation executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 5 of 6 [76/b9abe5] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 4 of 5 [0f/75c17e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 5 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [a3/36a193] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 5 of 6 [7c/b399a8] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 5 of 5 [0f/75c17e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 5 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 6 of 6 ✔ [7c/b399a8] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 5 of 5 [0f/75c17e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 5 of 6 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (42) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 6 of 6 ✔ [29/3d785f] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 5 of 6 [0e/f2650d] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 5 of 6 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 6 of 6 ✔ [29/3d785f] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 5 of 6 [0e/f2650d] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 5 of 6 [be/c9d6c0] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 6 of 6 ✔ [29/3d785f] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 5 of 6 [0e/f2650d] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 5 of 6 [be/c9d6c0] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 6 of 6 ✔ [29/3d785f] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 5 of 6 [0e/f2650d] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 6 of 6 ✔ [be/c9d6c0] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 6 of 6 ✔ [29/3d785f] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 5 of 6 [0e/f2650d] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 6 of 6 ✔ [be/c9d6c0] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 6 of 6 ✔ [29/3d785f] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 5 of 6 [0e/f2650d] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 6 of 6 ✔ [be/c9d6c0] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 6 of 6 ✔ [29/3d785f] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 6 of 6 ✔ [0e/f2650d] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 6 of 6 ✔ [be/c9d6c0] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 6 of 6 ✔ [29/3d785f] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 6 of 6 ✔ [0e/f2650d] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 6 of 6 ✔ [be/c9d6c0] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [8f/c24d11] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 0 of 1 executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 6 of 6 ✔ [29/3d785f] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 6 of 6 ✔ [0e/f2650d] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 6 of 6 ✔ [be/c9d6c0] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [8f/c24d11] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 0 of 1 executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 6 of 6 ✔ [29/3d785f] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 6 of 6 ✔ [0e/f2650d] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 6 of 6 ✔ [be/c9d6c0] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [8f/c24d11] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 1 of 1 ✔ executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 6 of 6 ✔ [29/3d785f] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 6 of 6 ✔ [0e/f2650d] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 6 of 6 ✔ [be/c9d6c0] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [8f/c24d11] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 1 of 1 ✔ -[nf-core/methylseq] Pipeline completed successfully- executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 6 of 6, cached: 6 ✔ [7d/6fdf29] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 6 of 6 ✔ [66/3b1413] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 6 of 6 ✔ [c5/52cbf8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 6 of 6 ✔ [da/831d7e] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 6 of 6 ✔ [39/fd93ac] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 6 of 6 ✔ [29/3d785f] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 6 of 6 ✔ [0e/f2650d] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 6 of 6 ✔ [be/c9d6c0] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [8f/c24d11] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 1 of 1 ✔ -[nf-core/methylseq] Pipeline completed successfully- Completed at: 31-Aug-2025 02:55:44 Duration : 3h 6m 37s CPU hours : 428.1 (9.1% cached) Succeeded : 44 Cached : 13 [Run 4] Completed score_min=L,0,-0.8