\n[Run 3] score_min=L,0,-0.6 -> /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-scoremin-L0_06 N E X T F L O W ~ version 25.04.6 Launching `https://github.com/nf-core/methylseq` [elated_brazil] DSL2 - revision: db60bfe1f0 [master] ------------------------------------------------------ ,--./,-. ___ __ __ __ ___ /,-._.--~' |\ | |__ __ / ` / \ |__) |__ } { | \| | \__, \__/ | \ |___ \`-._,-`-, `._,._,' nf-core/methylseq 4.1.0 ------------------------------------------------------ Input/output options input : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/code/05.samplesheet.csv outdir : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-scoremin-L0_06 Reference genome options fasta : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/data/GCA_013387185.1_ASM1338718v1_genomic.fa Bismark options nomeseq : true Institutional config options config_profile_description: UW Hyak Roberts labs cluster profile provided by nf-core/configs. config_profile_contact : Steven Roberts config_profile_url : https://faculty.washington.edu/sr320/ Generic options trace_report_suffix : 2025-08-30_20-34-52 Core Nextflow options revision : master runName : elated_brazil containerEngine : singularity launchDir : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-nextflow-minscore workDir : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-nextflow-minscore/work projectDir : /mmfs1/gscratch/scrubbed/sr320/.nextflow/assets/nf-core/methylseq userName : sr320 profile : standard configFiles : /mmfs1/gscratch/scrubbed/sr320/.nextflow/assets/nf-core/methylseq/nextflow.config, /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/code/05.config !! Only displaying parameters that differ from the pipeline defaults !! ------------------------------------------------------* The pipeline https://doi.org/10.5281/zenodo.1343417 * The nf-core framework https://doi.org/10.1038/s41587-020-0439-x * Software dependencies https://github.com/nf-core/methylseq/blob/master/CITATIONS.md WARN: The following invalid input values have been detected: * --score_min: L,0,-0.6 * --subset_reads: 100000 * --score_min_values: ["L,0,-0.2","L,0,-0.4","L,0,-0.6","L,0,-0.8"] [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [- ] NFC…A_INDEX_BISMARK_BWAMETH:BISMARK_GENOMEPREPARATION - [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [- ] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC - [- ] NFCORE_METHYLSEQ:METHYLSEQ:TRIMGALORE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [- ] NFC…A_INDEX_BISMARK_BWAMETH:BISMARK_GENOMEPREPARATION - [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [- ] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC - [- ] NFCORE_METHYLSEQ:METHYLSEQ:TRIMGALORE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 5 of 5, cached: 5 [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 4 of 4, cached: 4 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (1) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (2) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [6b/6a16a8] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (3) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [ae/a7f248] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (4) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [8b/d7b55a] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (5) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [ec/4b10cc] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (6) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [47/12b60a] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (6) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [47/12b60a] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (6) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [47/12b60a] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (6) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [8b/d7b55a] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 1 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE | 0 of 1 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (7) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [8b/d7b55a] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 1 of 6 [85/bd48e8] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 0 of 1 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (7) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [8b/d7b55a] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 1 of 6 [85/bd48e8] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 0 of 1 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (7) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [47/12b60a] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 2 of 6 [85/bd48e8] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 0 of 2 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (8) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [47/12b60a] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 2 of 6 [60/849646] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 0 of 2 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (8) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [47/12b60a] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 2 of 6 [60/849646] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 0 of 2 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (9) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [6b/6a16a8] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 3 of 6 [9a/a8b71e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 0 of 3 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (9) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [ec/4b10cc] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 4 of 6 [9a/a8b71e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 0 of 3 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (10) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [ec/4b10cc] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 4 of 6 [3c/73c31e] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 0 of 4 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (10) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [ec/4b10cc] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 4 of 6 [3c/73c31e] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 0 of 4 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (10) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [ec/4b10cc] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 4 of 6 [3c/73c31e] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 0 of 4 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (11) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [ae/a7f248] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [1e/e438a9] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 0 of 5 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (11) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [ae/a7f248] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 5 of 6 [1e/e438a9] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 0 of 5 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (12) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (12) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (14) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [85/bd48e8] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 1 of 6 [db/5a0da5] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 0 of 1 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [d9/c5e440] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 0 of 1 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (14) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [85/bd48e8] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 1 of 6 [db/5a0da5] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 0 of 1 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [d9/c5e440] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 0 of 1 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (14) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [85/bd48e8] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 1 of 6 [db/5a0da5] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 0 of 1 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [d9/c5e440] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 0 of 1 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (14) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [60/849646] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 2 of 6 [db/5a0da5] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 0 of 2 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [d9/c5e440] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (16) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [60/849646] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 2 of 6 [e6/6e5188] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 0 of 2 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [0f/8309a1] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (16) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [60/849646] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 2 of 6 [e6/6e5188] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 0 of 2 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [0f/8309a1] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (16) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [60/849646] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 2 of 6 [e6/6e5188] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 0 of 2 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [0f/8309a1] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (16) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [9a/a8b71e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 3 of 6 [e6/6e5188] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 0 of 3 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [0f/8309a1] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (18) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [9a/a8b71e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 3 of 6 [f6/06e0d8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 0 of 3 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [2f/b3869a] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (18) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [3c/73c31e] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 4 of 6 [f6/06e0d8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 0 of 4 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [2f/b3869a] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (20) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [3c/73c31e] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 4 of 6 [76/4008bd] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 4 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [12/54c0b6] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (20) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [3c/73c31e] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 4 of 6 [76/4008bd] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 4 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [12/54c0b6] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (20) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [3c/73c31e] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 4 of 6 [db/5a0da5] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 1 of 4 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX | 0 of 1 [12/54c0b6] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (21) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [3c/73c31e] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 4 of 6 [db/5a0da5] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 1 of 4 [6c/04be49] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 0 of 1 [12/54c0b6] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (21) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [3c/73c31e] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 4 of 6 [db/5a0da5] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 1 of 4 [6c/04be49] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 0 of 1 [12/54c0b6] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (23) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [1e/e438a9] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 5 of 6 [52/e2476a] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 1 of 5 [6c/04be49] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 0 of 1 [6f/ed26be] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (23) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [1e/e438a9] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 5 of 6 [52/e2476a] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 1 of 5 [6c/04be49] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 0 of 1 [6f/ed26be] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (23) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [1e/e438a9] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 5 of 6 [76/4008bd] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 2 of 5 [6c/04be49] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 0 of 2 [6f/ed26be] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (24) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [1e/e438a9] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 5 of 6 [76/4008bd] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 2 of 5 [54/74936e] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 0 of 2 [6f/ed26be] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (25) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [1e/e438a9] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 5 of 6 [f6/06e0d8] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 3 of 5 [8d/d19031] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 0 of 3 [6f/ed26be] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (27) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 3 of 6 [8d/d19031] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 0 of 3 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (27) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 3 of 6 [8d/d19031] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 0 of 3 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (27) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 3 of 6 [6c/04be49] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 1 of 3 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (27) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [e6/6e5188] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 4 of 6 [6c/04be49] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 1 of 4 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (28) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [e6/6e5188] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 4 of 6 [84/f47a20] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 1 of 4 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (28) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [e6/6e5188] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 4 of 6 [54/74936e] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 2 of 4 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (28) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [e6/6e5188] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 4 of 6 [8d/d19031] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 3 of 4 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (28) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [e6/6e5188] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 4 of 6 [8d/d19031] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 3 of 4 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (28) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [e6/6e5188] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 4 of 6 [8d/d19031] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 3 of 4 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (28) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [52/e2476a] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 5 of 6 [8d/d19031] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 3 of 5 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (29) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [52/e2476a] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 5 of 6 [60/18a737] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 3 of 5 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (29) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [52/e2476a] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 5 of 6 [60/18a737] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 3 of 5 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (29) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [52/e2476a] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 5 of 6 [84/f47a20] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 4 of 5 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (29) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [52/e2476a] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 5 of 6 [60/18a737] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 5 of 5 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (30) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 5 of 6 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (30) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 5 of 6 [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (30) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (30) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [d9/c5e440] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 1 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE | 0 of 1 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT | 0 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (32) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [d9/c5e440] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 1 of 6 [40/31fef1] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 0 of 1 [e9/6bc09b] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 0 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (34) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [2f/b3869a] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 2 of 6 [e5/080b76] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 0 of 2 [b9/23d912] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 0 of 2 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (34) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [2f/b3869a] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 2 of 6 [e5/080b76] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 0 of 2 [b9/23d912] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 0 of 2 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (34) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [2f/b3869a] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 2 of 6 [e5/080b76] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 0 of 2 [b9/23d912] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 0 of 2 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (34) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [2f/b3869a] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 2 of 6 [e5/080b76] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 0 of 2 [e9/6bc09b] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 1 of 2 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (35) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [0f/8309a1] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 3 of 6 [c0/0efb98] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 0 of 3 [b9/23d912] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 2 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (36) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [0f/8309a1] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 3 of 6 [c0/0efb98] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 0 of 3 [f6/c91570] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_22) | 2 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (36) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [0f/8309a1] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 3 of 6 [c0/0efb98] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 0 of 3 [f6/c91570] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_22) | 2 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (38) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [12/54c0b6] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 4 of 6 [26/2d5841] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 4 [f7/0b1eb6] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 2 of 4 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (38) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [12/54c0b6] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 4 of 6 [26/2d5841] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 4 [f7/0b1eb6] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 2 of 4 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (38) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [12/54c0b6] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 4 of 6 [26/2d5841] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 4 [f7/0b1eb6] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 4 of 4 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6f/ed26be] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 5 of 6 [85/be8779] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 0 of 5 [2e/c355c9] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 4 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6f/ed26be] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 5 of 6 [85/be8779] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 0 of 5 [2e/c355c9] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 4 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6f/ed26be] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 5 of 6 [85/be8779] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 0 of 5 [2e/c355c9] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 5 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (42) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [55/603308] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 0 of 6 [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 5 of 6 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [55/603308] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 0 of 6 [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 5 of 6 [91/890f25] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [55/603308] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 0 of 6 [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 5 of 6 [91/890f25] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [55/603308] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 0 of 6 [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 6 of 6 ✔ [91/890f25] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [55/603308] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 0 of 6 [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 6 of 6 ✔ [91/890f25] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [e5/080b76] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 1 of 6 [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 6 of 6 ✔ [91/890f25] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [40/31fef1] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 2 of 6 [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 6 of 6 ✔ [91/890f25] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [c0/0efb98] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 3 of 6 [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 6 of 6 ✔ [91/890f25] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [26/2d5841] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 4 of 6 [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 6 of 6 ✔ [91/890f25] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [85/be8779] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 5 of 6 [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 6 of 6 ✔ [91/890f25] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [55/603308] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 6 of 6 ✔ [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 6 of 6 ✔ [91/890f25] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [55/603308] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 6 of 6 ✔ [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 6 of 6 ✔ [91/890f25] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [eb/04cb4e] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 0 of 1 executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [55/603308] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 6 of 6 ✔ [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 6 of 6 ✔ [91/890f25] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [eb/04cb4e] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 0 of 1 executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [55/603308] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 6 of 6 ✔ [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 6 of 6 ✔ [91/890f25] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [eb/04cb4e] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 1 of 1 ✔ executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [55/603308] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 6 of 6 ✔ [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 6 of 6 ✔ [91/890f25] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [eb/04cb4e] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 1 of 1 ✔ -[nf-core/methylseq] Pipeline completed successfully- executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [f4/e502b2] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 6 of 6 ✔ [fa/f049c2] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 6 of 6 ✔ [44/c237a3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 6 of 6 ✔ [1f/8e1d70] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 6 of 6 ✔ [6b/9ae281] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 6 of 6 ✔ [55/603308] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 6 of 6 ✔ [9a/758af4] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 6 of 6 ✔ [91/890f25] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [eb/04cb4e] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 1 of 1 ✔ -[nf-core/methylseq] Pipeline completed successfully- Completed at: 30-Aug-2025 23:49:01 Duration : 3h 14m 6s CPU hours : 522.6 (7.5% cached) Succeeded : 44 Cached : 13 [Run 3] Completed score_min=L,0,-0.6