\n[Run 2] score_min=L,0,-0.4 -> /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-scoremin-L0_04 N E X T F L O W ~ version 25.04.6 Launching `https://github.com/nf-core/methylseq` [hopeful_swirles] DSL2 - revision: db60bfe1f0 [master] ------------------------------------------------------ ,--./,-. ___ __ __ __ ___ /,-._.--~' |\ | |__ __ / ` / \ |__) |__ } { | \| | \__, \__/ | \ |___ \`-._,-`-, `._,._,' nf-core/methylseq 4.1.0 ------------------------------------------------------ Input/output options input : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/code/05.samplesheet.csv outdir : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-scoremin-L0_04 Reference genome options fasta : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/data/GCA_013387185.1_ASM1338718v1_genomic.fa Bismark options nomeseq : true Institutional config options config_profile_description: UW Hyak Roberts labs cluster profile provided by nf-core/configs. config_profile_contact : Steven Roberts config_profile_url : https://faculty.washington.edu/sr320/ Generic options trace_report_suffix : 2025-08-30_17-45-29 Core Nextflow options revision : master runName : hopeful_swirles containerEngine : singularity launchDir : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-nextflow-minscore workDir : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-nextflow-minscore/work projectDir : /mmfs1/gscratch/scrubbed/sr320/.nextflow/assets/nf-core/methylseq userName : sr320 profile : standard configFiles : /mmfs1/gscratch/scrubbed/sr320/.nextflow/assets/nf-core/methylseq/nextflow.config, /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/code/05.config !! Only displaying parameters that differ from the pipeline defaults !! ------------------------------------------------------* The pipeline https://doi.org/10.5281/zenodo.1343417 * The nf-core framework https://doi.org/10.1038/s41587-020-0439-x * Software dependencies https://github.com/nf-core/methylseq/blob/master/CITATIONS.md WARN: The following invalid input values have been detected: * --score_min: L,0,-0.4 * --subset_reads: 100000 * --score_min_values: ["L,0,-0.2","L,0,-0.4","L,0,-0.6","L,0,-0.8"] [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [- ] NFC…A_INDEX_BISMARK_BWAMETH:BISMARK_GENOMEPREPARATION - [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [- ] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC - [- ] NFCORE_METHYLSEQ:METHYLSEQ:TRIMGALORE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [- ] NFC…A_INDEX_BISMARK_BWAMETH:BISMARK_GENOMEPREPARATION - [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [- ] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC - [- ] NFCORE_METHYLSEQ:METHYLSEQ:TRIMGALORE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 [e0/d59d74] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_2) | 4 of 4, cached: 4 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (1) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [20/e85aff] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (2) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (3) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [07/69ab35] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (4) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (5) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [c1/f0d2ef] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (6) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [75/2853d2] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (6) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [75/2853d2] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (6) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [75/2853d2] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (6) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [75/2853d2] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (7) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [c1/f0d2ef] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 1 of 6 [4e/6c7553] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 0 of 1 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (7) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [c1/f0d2ef] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 1 of 6 [4e/6c7553] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 0 of 1 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (8) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [75/2853d2] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 2 of 6 [35/e8f60c] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 0 of 2 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (9) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [20/e85aff] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 3 of 6 [00/1d46f8] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 0 of 3 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (10) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [07/69ab35] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 4 of 6 [12/1708a0] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 0 of 4 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (10) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [07/69ab35] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 4 of 6 [12/1708a0] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 0 of 4 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (10) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [07/69ab35] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 4 of 6 [12/1708a0] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 0 of 4 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (10) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [12/1708a0] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 0 of 5 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (11) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [e1/24c39b] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 0 of 5 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (11) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [e1/24c39b] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 0 of 5 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (11) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [4e/6c7553] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 1 of 5 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (13) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [4e/6c7553] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 1 of 5 [48/a20be6] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 1 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [e9/361375] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 1 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (13) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [4e/6c7553] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 1 of 5 [48/a20be6] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 1 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [e9/361375] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 1 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (15) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [35/e8f60c] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 2 of 5 [3d/2967a4] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 0 of 2 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [ab/da6a16] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (15) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [35/e8f60c] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 2 of 5 [3d/2967a4] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 0 of 2 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [ab/da6a16] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (15) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [35/e8f60c] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 2 of 5 [3d/2967a4] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 0 of 2 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [ab/da6a16] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (17) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [12/1708a0] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 4 of 5 [81/097ad4] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 0 of 4 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [b3/1fa34b] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (18) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [12/1708a0] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 4 of 5 [8e/cb6f49] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 0 of 4 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [b3/1fa34b] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (19) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [12/1708a0] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 4 of 5 [8e/cb6f49] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 0 of 4 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [a2/e2aff1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (19) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [12/1708a0] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 4 of 5 [8e/cb6f49] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 0 of 4 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [a2/e2aff1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (19) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [12/1708a0] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 4 of 5 [48/a20be6] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 1 of 4 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX | 0 of 1 [a2/e2aff1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (20) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [12/1708a0] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 4 of 5 [48/a20be6] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 1 of 4 [02/fe23de] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 0 of 1 [a2/e2aff1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (20) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [d1/afa326] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 5 of 6 [12/1708a0] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 4 of 5 [48/a20be6] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 1 of 4 [02/fe23de] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 0 of 1 [a2/e2aff1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (20) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [12/1708a0] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 4 of 6 [48/a20be6] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 1 of 4 [02/fe23de] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 0 of 1 [a2/e2aff1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (21) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 4 of 6 [48/a20be6] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 1 of 4 [02/fe23de] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 0 of 1 [a2/e2aff1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (21) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 4 of 6 [48/a20be6] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 1 of 4 [02/fe23de] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 1 of 1 [a2/e2aff1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (21) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 4 of 6 [48/a20be6] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 1 of 4 [02/fe23de] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 1 of 1 [a2/e2aff1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (21) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 4 of 6 [3d/2967a4] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 2 of 4 [02/fe23de] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 1 of 2 [a2/e2aff1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (22) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 4 of 6 [3d/2967a4] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 2 of 4 [4b/dbf97a] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 1 of 2 [a2/e2aff1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (22) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 4 of 6 [3d/2967a4] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 2 of 4 [4b/dbf97a] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 1 of 2 [a2/e2aff1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (23) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [e1/24c39b] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 5 of 6 [3d/2967a4] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 2 of 5 [4b/dbf97a] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 2 of 2 [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (24) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [e1/24c39b] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 5 of 6 [b4/60a361] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 2 of 5 [4b/dbf97a] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 2 of 2 [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (24) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [e1/24c39b] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 5 of 6 [8e/cb6f49] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 3 of 5 [4b/dbf97a] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 2 of 3 [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (25) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [e1/24c39b] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 5 of 6 [8e/cb6f49] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 3 of 5 [bd/096c73] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 2 of 3 [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (26) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [e1/24c39b] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 5 of 6 [81/097ad4] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 4 of 5 [25/0a3841] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 2 of 4 [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (26) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [e1/24c39b] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 5 of 6 [81/097ad4] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 4 of 5 [25/0a3841] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 2 of 4 [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (26) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [e1/24c39b] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 5 of 6 [81/097ad4] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 4 of 5 [bd/096c73] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 3 of 4 [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (26) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [e1/24c39b] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 5 of 6 [81/097ad4] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 4 of 5 [bd/096c73] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 3 of 4 [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (26) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [e1/24c39b] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 5 of 6 [81/097ad4] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 4 of 5 [25/0a3841] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 4 of 4 [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (27) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [e1/24c39b] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 5 of 6 [b4/60a361] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 5 of 5 [4f/d102af] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 4 of 5 [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (27) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [e1/24c39b] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 5 of 6 [b4/60a361] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 5 of 5 [4f/d102af] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 4 of 5 [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (27) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [e1/24c39b] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 5 of 6 [b4/60a361] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 5 of 5 [4f/d102af] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 5 of 5 [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (28) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 5 of 6 [4f/d102af] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 5 of 5 [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (29) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 5 of 6 [4f/d102af] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 5 of 5 [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (29) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 5 of 6 [4f/d102af] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 5 of 5 [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (29) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [4f/d102af] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 5 of 6 [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (30) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 5 of 6 [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (30) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 5 of 6 [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (30) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 0 of 6 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (31) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [e9/361375] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 1 of 6 [e5/42e71a] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT | 0 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (32) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [e9/361375] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 1 of 6 [e5/42e71a] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [f2/f8c266] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 0 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (32) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [e9/361375] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 1 of 6 [e5/42e71a] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [f2/f8c266] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 0 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (32) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [e9/361375] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 1 of 6 [e5/42e71a] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [f2/f8c266] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 1 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (34) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [b3/1fa34b] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 3 of 6 [e9/a34512] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 0 of 3 [8a/ce3b31] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 1 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (35) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [b3/1fa34b] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 3 of 6 [a4/363ee5] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 0 of 3 [8a/ce3b31] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 1 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (36) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [b3/1fa34b] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 3 of 6 [a4/363ee5] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 0 of 3 [90/a57a43] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 1 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (36) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [b3/1fa34b] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 3 of 6 [a4/363ee5] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 0 of 3 [8a/ce3b31] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 2 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (36) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [b3/1fa34b] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 3 of 6 [a4/363ee5] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 0 of 3 [90/a57a43] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 3 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (36) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [ab/da6a16] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 4 of 6 [a4/363ee5] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 0 of 4 [90/a57a43] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 3 of 4 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (38) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [ab/da6a16] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 4 of 6 [0d/3f758e] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 0 of 4 [78/e667bf] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_22) | 3 of 4 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (38) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [ab/da6a16] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 4 of 6 [0d/3f758e] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 0 of 4 [78/e667bf] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_22) | 4 of 4 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (39) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 5 of 6 [0d/3f758e] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 0 of 5 [57/d17f5e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 4 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 5 of 6 [ed/651f76] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 0 of 5 [57/d17f5e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 4 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 5 of 6 [ed/651f76] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 0 of 5 [57/d17f5e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 5 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 5 of 6 [e9/a34512] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 2 of 5 [57/d17f5e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 5 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 5 of 6 [0d/3f758e] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 3 of 5 [57/d17f5e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 5 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 5 of 6 [e5/42e71a] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 4 of 5 [57/d17f5e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 5 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [b4/1ce085] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 5 of 6 [ed/651f76] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 5 of 5 [57/d17f5e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 5 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 6 of 6 ✔ [ed/651f76] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 5 of 6 [57/d17f5e] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 5 of 6 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (42) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 6 of 6 ✔ [5f/24989f] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 5 of 6 [26/d1e6a1] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 5 of 6 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 6 of 6 ✔ [5f/24989f] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 5 of 6 [26/d1e6a1] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 5 of 6 [98/560438] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 6 of 6 ✔ [5f/24989f] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 5 of 6 [26/d1e6a1] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 5 of 6 [98/560438] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 6 of 6 ✔ [5f/24989f] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 5 of 6 [26/d1e6a1] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 5 of 6 [98/560438] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 6 of 6 ✔ [5f/24989f] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 5 of 6 [26/d1e6a1] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 6 of 6 ✔ [98/560438] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (43) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 6 of 6 ✔ [5f/24989f] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 6 of 6 ✔ [26/d1e6a1] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 6 of 6 ✔ [98/560438] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 6 of 6 ✔ [5f/24989f] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 6 of 6 ✔ [26/d1e6a1] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 6 of 6 ✔ [98/560438] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [66/63a1bc] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 0 of 1 executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 6 of 6 ✔ [5f/24989f] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 6 of 6 ✔ [26/d1e6a1] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 6 of 6 ✔ [98/560438] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [66/63a1bc] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 0 of 1 executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 6 of 6 ✔ [5f/24989f] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 6 of 6 ✔ [26/d1e6a1] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 6 of 6 ✔ [98/560438] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [66/63a1bc] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 1 of 1 ✔ executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 6 of 6 ✔ [5f/24989f] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 6 of 6 ✔ [26/d1e6a1] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 6 of 6 ✔ [98/560438] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [66/63a1bc] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 1 of 1 ✔ -[nf-core/methylseq] Pipeline completed successfully- executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1, cached: 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 6 of 6, cached: 6 ✔ [78/a007da] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 6 of 6 ✔ [77/d6e030] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 6 of 6 ✔ [79/b03985] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 6 of 6 ✔ [e3/1bed6f] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 6 of 6 ✔ [c6/5f22df] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 6 of 6 ✔ [5f/24989f] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 6 of 6 ✔ [26/d1e6a1] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 6 of 6 ✔ [98/560438] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [66/63a1bc] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 1 of 1 ✔ -[nf-core/methylseq] Pipeline completed successfully- Completed at: 30-Aug-2025 20:34:48 Duration : 2h 49m 16s CPU hours : 451.5 (8.6% cached) Succeeded : 44 Cached : 13 [Run 2] Completed score_min=L,0,-0.4