\n[Run 1] score_min=L,0,-0.2 -> /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-scoremin-L0_02 N E X T F L O W ~ version 25.04.6 WARN: It appears you have never run this project before -- Option `-resume` is ignored Launching `https://github.com/nf-core/methylseq` [admiring_archimedes] DSL2 - revision: db60bfe1f0 [master] ------------------------------------------------------ ,--./,-. ___ __ __ __ ___ /,-._.--~' |\ | |__ __ / ` / \ |__) |__ } { | \| | \__, \__/ | \ |___ \`-._,-`-, `._,._,' nf-core/methylseq 4.1.0 ------------------------------------------------------ Input/output options input : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/code/05.samplesheet.csv outdir : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-scoremin-L0_02 Reference genome options fasta : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/data/GCA_013387185.1_ASM1338718v1_genomic.fa Bismark options nomeseq : true Institutional config options config_profile_description: UW Hyak Roberts labs cluster profile provided by nf-core/configs. config_profile_contact : Steven Roberts config_profile_url : https://faculty.washington.edu/sr320/ Generic options trace_report_suffix : 2025-08-30_15-18-32 Core Nextflow options revision : master runName : admiring_archimedes containerEngine : singularity launchDir : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-nextflow-minscore workDir : /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/output/05-nextflow-minscore/work projectDir : /mmfs1/gscratch/scrubbed/sr320/.nextflow/assets/nf-core/methylseq userName : sr320 profile : standard configFiles : /mmfs1/gscratch/scrubbed/sr320/.nextflow/assets/nf-core/methylseq/nextflow.config, /mmfs1/gscratch/scrubbed/sr320/github/project-caligus-methylation/code/05.config !! Only displaying parameters that differ from the pipeline defaults !! ------------------------------------------------------* The pipeline https://doi.org/10.5281/zenodo.1343417 * The nf-core framework https://doi.org/10.1038/s41587-020-0439-x * Software dependencies https://github.com/nf-core/methylseq/blob/master/CITATIONS.md WARN: The following invalid input values have been detected: * --score_min: L,0,-0.2 * --subset_reads: 100000 * --score_min_values: ["L,0,-0.2","L,0,-0.4","L,0,-0.6","L,0,-0.8"] [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [- ] NFC…A_INDEX_BISMARK_BWAMETH:BISMARK_GENOMEPREPARATION - [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [- ] NFC…A_INDEX_BISMARK_BWAMETH:BISMARK_GENOMEPREPARATION - [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [- ] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC - [- ] NFCORE_METHYLSEQ:METHYLSEQ:TRIMGALORE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [- ] NFC…A_INDEX_BISMARK_BWAMETH:BISMARK_GENOMEPREPARATION - [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [- ] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC - [- ] NFCORE_METHYLSEQ:METHYLSEQ:TRIMGALORE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (1) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [- ] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC | 0 of 6 [- ] NFCORE_METHYLSEQ:METHYLSEQ:TRIMGALORE | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (2) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [6b/32f883] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Male_3) | 0 of 6 [- ] NFCORE_METHYLSEQ:METHYLSEQ:TRIMGALORE | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (3) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [2d/14afbf] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Male_1) | 0 of 6 [- ] NFCORE_METHYLSEQ:METHYLSEQ:TRIMGALORE | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (4) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [2d/14afbf] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Male_1) | 0 of 6 [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (5) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [7d/a6d5c5] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_11) | 0 of 6 [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (6) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [76/429df4] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Male_2) | 0 of 6 [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (7) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [76/429df4] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Male_2) | 0 of 6 [16/b8863e] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_3) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (8) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [76/429df4] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Male_2) | 0 of 6 [5c/792409] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_11) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (9) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [76/429df4] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Male_2) | 0 of 6 [e0/d59d74] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_2) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (10) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 0 of 6 [e0/d59d74] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_2) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (11) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 0 of 6 [e0/d59d74] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_2) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (12) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 0 of 6 [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (13) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 0 of 6 [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (13) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 0 of 6 [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (13) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 0 of 6 [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (13) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 0 of 6 [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (13) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [7d/a6d5c5] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_11) | 1 of 6 [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (13) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [2d/14afbf] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Male_1) | 2 of 6 [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (13) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [6b/32f883] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Male_3) | 3 of 6 [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (13) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [76/429df4] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Male_2) | 4 of 6 [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (13) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [0d/deb7b1] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_22) | 5 of 6 [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (13) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (13) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 0 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN - [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (13) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 2 of 6 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_ALIGN | 0 of 2 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (15) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [4e/cfa25c] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_22) | 2 of 6 [9c/69f6bc] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 0 of 2 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (15) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 3 of 6 [9c/69f6bc] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 0 of 3 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (16) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [74/7e98a0] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_33) | 3 of 6 [e9/819ef1] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 0 of 3 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (17) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [5c/792409] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_11) | 4 of 6 [a1/3c4a4e] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 0 of 4 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (17) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [5c/792409] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_11) | 4 of 6 [a1/3c4a4e] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 0 of 4 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (17) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [5c/792409] NFC…ETHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Female_11) | 4 of 6 [a1/3c4a4e] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 0 of 4 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (18) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [16/b8863e] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_3) | 5 of 6 [99/dd85d5] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 0 of 5 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (18) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [16/b8863e] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_3) | 5 of 6 [99/dd85d5] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 0 of 5 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (18) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [99/dd85d5] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (19) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (19) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 0 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE - [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (19) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [e9/819ef1] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 1 of 6 [- ] NFC…SEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_DEDUPLICATE | 0 of 1 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (20) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [e9/819ef1] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 1 of 6 [d7/aa3186] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 0 of 1 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (20) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [e9/819ef1] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_33) | 1 of 6 [d7/aa3186] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 0 of 1 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (21) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [a1/3c4a4e] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 2 of 6 [dd/d5a63c] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 0 of 2 [- ] NFC…METHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_SORT - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [- ] NFC…_ALIGN_DEDUP_BISMARK:BISMARK_METHYLATIONEXTRACTOR - [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (23) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [a1/3c4a4e] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_11) | 2 of 6 [d7/aa3186] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_33) | 1 of 2 [13/36df8b] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 1 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [90/c674ad] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 1 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (24) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [9c/69f6bc] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 3 of 6 [05/aa4144] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 1 of 3 [13/36df8b] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 1 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [90/c674ad] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 1 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (24) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [9c/69f6bc] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_2) | 3 of 6 [05/aa4144] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 1 of 3 [13/36df8b] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 1 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [90/c674ad] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 1 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (25) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [61/3785d6] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 4 of 6 [c8/bb21ab] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 1 of 4 [13/36df8b] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 1 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [90/c674ad] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 1 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (25) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [61/3785d6] NFC…N_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Female_22) | 4 of 6 [c8/bb21ab] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 1 of 4 [13/36df8b] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 1 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [90/c674ad] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 1 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (26) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [99/dd85d5] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 5 of 6 [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 1 of 5 [13/36df8b] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 0 of 1 [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:SAMTOOLS_INDEX - [90/c674ad] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 1 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (27) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [99/dd85d5] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 5 of 6 [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 1 of 5 [13/36df8b] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 1 of 1 [2a/dac24e] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 0 of 1 [90/c674ad] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 1 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (27) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [99/dd85d5] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 5 of 6 [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 1 of 5 [13/36df8b] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 1 of 1 [2a/dac24e] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 0 of 1 [90/c674ad] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 1 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (27) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [99/dd85d5] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 5 of 6 [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 1 of 5 [13/36df8b] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_33) | 1 of 1 [2a/dac24e] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 1 of 1 [90/c674ad] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 0 of 1 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (29) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [99/dd85d5] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 5 of 6 [05/aa4144] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_2) | 2 of 5 [92/067733] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 1 of 2 [2a/dac24e] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 1 of 1 [f0/63e92b] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 0 of 2 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (31) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [99/dd85d5] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 5 of 6 [dd/d5a63c] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 3 of 5 [8d/ffb21a] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 1 of 3 [2a/dac24e] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 1 of 1 [c5/c94055] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (31) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [99/dd85d5] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 5 of 6 [dd/d5a63c] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_11) | 3 of 5 [8d/ffb21a] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 1 of 3 [2a/dac24e] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 1 of 1 [c5/c94055] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 0 of 3 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (33) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [99/dd85d5] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 5 of 6 [c8/bb21ab] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 4 of 5 [74/799373] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 1 of 4 [2a/dac24e] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_33) | 1 of 1 [90/b5b9e7] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (34) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [99/dd85d5] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_3) | 5 of 6 [c8/bb21ab] NFC…P_BISMARK:BISMARK_DEDUPLICATE (Caligus_Female_22) | 4 of 5 [92/067733] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 2 of 4 [7d/d8c267] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 1 of 2 [90/b5b9e7] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (35) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 4 of 6 [92/067733] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_2) | 2 of 4 [7d/d8c267] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 1 of 2 [90/b5b9e7] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 0 of 4 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (37) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [21/6102cc] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 2 of 5 [7d/d8c267] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 1 of 2 [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (37) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [21/6102cc] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 2 of 5 [7d/d8c267] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 1 of 2 [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (37) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [21/6102cc] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 2 of 5 [7d/d8c267] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 1 of 2 [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (37) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [21/6102cc] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 2 of 5 [7d/d8c267] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 2 of 2 [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (37) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [21/6102cc] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 3 of 5 [7d/d8c267] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_2) | 2 of 3 [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (38) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [21/6102cc] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 3 of 5 [3a/4d76aa] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 2 of 3 [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (38) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [21/6102cc] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_3) | 3 of 5 [3a/4d76aa] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_3) | 2 of 4 [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (39) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [74/799373] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_22) | 4 of 5 [3f/eed839] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 2 of 4 [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [8d/ffb21a] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 5 of 5 [98/3d03bf] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 2 of 5 [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [8d/ffb21a] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 5 of 5 [98/3d03bf] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 2 of 5 [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [8d/ffb21a] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 5 of 5 [98/3d03bf] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_11) | 3 of 5 [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (40) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [8d/ffb21a] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 5 of 5 [3f/eed839] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 5 of 5 [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 0 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE - [- ] NFC…ETHYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_REPORT - [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (41) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [8d/ffb21a] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 5 of 5 [3f/eed839] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 5 of 5 [90/c674ad] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 1 of 5 [- ] NFC…STQ_ALIGN_DEDUP_BISMARK:BISMARK_COVERAGE2CYTOSINE | 0 of 1 [b1/afcfb8] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 0 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (42) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [8d/ffb21a] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 5 of 5 [3f/eed839] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 5 of 5 [90/c674ad] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 1 of 5 [d0/2fbf06] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [b1/afcfb8] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 0 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (42) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [8d/ffb21a] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 5 of 5 [3f/eed839] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 5 of 5 [90/c674ad] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 1 of 5 [d0/2fbf06] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [b1/afcfb8] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 0 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (42) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [8d/ffb21a] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 5 of 5 [3f/eed839] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 5 of 5 [90/c674ad] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 1 of 5 [d0/2fbf06] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [b1/afcfb8] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 0 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (42) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [82/a403ac] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_3) | 5 of 6 [8d/ffb21a] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 5 of 5 [3f/eed839] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 5 of 5 [90/c674ad] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 1 of 5 [d0/2fbf06] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [b1/afcfb8] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 1 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (42) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [8d/ffb21a] NFC…N_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Female_11) | 5 of 6 [3f/eed839] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 5 of 5 [90/c674ad] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_33) | 1 of 6 [d0/2fbf06] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [b1/afcfb8] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 1 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 5 of 6 [3f/eed839] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 5 of 5 [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 1 of 6 [d0/2fbf06] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [b1/afcfb8] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 1 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 5 of 6 [3f/eed839] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 5 of 5 [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 1 of 6 [d0/2fbf06] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [b1/afcfb8] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 1 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (44) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [3f/eed839] NFC…_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Female_22) | 5 of 6 [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 1 of 6 [d0/2fbf06] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [b1/afcfb8] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 1 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (45) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 5 of 6 [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 1 of 6 [d0/2fbf06] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [b1/afcfb8] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 1 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (45) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 5 of 6 [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 1 of 6 [d0/2fbf06] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [b1/afcfb8] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 1 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (45) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 1 of 6 [d0/2fbf06] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 0 of 1 [b1/afcfb8] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_33) | 1 of 1 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (47) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [f0/63e92b] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 2 of 6 [9e/70077a] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 0 of 2 [71/695369] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 1 of 2 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (47) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [f0/63e92b] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 2 of 6 [9e/70077a] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 0 of 2 [71/695369] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 1 of 2 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (47) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [f0/63e92b] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_2) | 2 of 6 [9e/70077a] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 0 of 2 [71/695369] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 2 of 2 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (47) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [90/b5b9e7] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 3 of 6 [9e/70077a] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 0 of 3 [71/695369] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_2) | 2 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (49) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [90/b5b9e7] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 3 of 6 [ba/29c177] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 0 of 3 [bc/070332] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_22) | 2 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (49) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [90/b5b9e7] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 3 of 6 [ba/29c177] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 0 of 3 [bc/070332] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_22) | 2 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (49) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [90/b5b9e7] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 3 of 6 [ba/29c177] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 0 of 3 [bc/070332] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_22) | 2 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (49) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [90/b5b9e7] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_22) | 3 of 6 [ba/29c177] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 0 of 3 [bc/070332] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_22) | 3 of 3 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (50) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [c5/c94055] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 4 of 6 [a3/c6c3f8] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 0 of 4 [bc/070332] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_22) | 3 of 4 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (51) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [c5/c94055] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 4 of 6 [a3/c6c3f8] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 0 of 4 [88/96b0bf] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 3 of 4 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (51) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [c5/c94055] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 4 of 6 [a3/c6c3f8] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 0 of 4 [88/96b0bf] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 3 of 4 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (51) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [c5/c94055] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 4 of 6 [a3/c6c3f8] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 0 of 4 [88/96b0bf] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 4 of 4 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (51) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [c5/c94055] NFC…:BISMARK_METHYLATIONEXTRACTOR (Caligus_Female_11) | 4 of 6 [d0/2fbf06] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_33) | 1 of 4 [88/96b0bf] NFC…_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Female_11) | 4 of 4 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (53) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 5 of 6 [73/5e471b] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 1 of 5 [17/ee2ce8] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 4 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (53) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 5 of 6 [73/5e471b] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 1 of 5 [17/ee2ce8] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 4 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (53) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 5 of 6 [73/5e471b] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 1 of 5 [17/ee2ce8] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 4 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (53) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [fb/dcd4c1] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_3) | 5 of 6 [73/5e471b] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 1 of 5 [17/ee2ce8] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_3) | 5 of 5 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY - [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (55) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [f8/43fb15] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 1 of 6 [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 5 of 6 [- ] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (56) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [f8/43fb15] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 1 of 6 [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 5 of 6 [b4/5b9760] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (56) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [f8/43fb15] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 1 of 6 [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 5 of 6 [b4/5b9760] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (56) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [f8/43fb15] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 1 of 6 [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 6 of 6 ✔ [b4/5b9760] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 0 of 1 [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (56) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [f8/43fb15] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 1 of 6 [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 6 of 6 ✔ [b4/5b9760] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (56) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [9e/70077a] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_2) | 2 of 6 [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 6 of 6 ✔ [b4/5b9760] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (56) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [ba/29c177] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_22) | 3 of 6 [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 6 of 6 ✔ [b4/5b9760] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (56) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [a3/c6c3f8] NFC…ARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Female_11) | 4 of 6 [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 6 of 6 ✔ [b4/5b9760] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (56) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [73/5e471b] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_3) | 5 of 6 [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 6 of 6 ✔ [b4/5b9760] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (56) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [f8/43fb15] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 6 of 6 ✔ [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 6 of 6 ✔ [b4/5b9760] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC - executor > slurm (56) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [f8/43fb15] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 6 of 6 ✔ [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 6 of 6 ✔ [b4/5b9760] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 0 of 1 executor > slurm (57) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [f8/43fb15] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 6 of 6 ✔ [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 6 of 6 ✔ [b4/5b9760] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [f3/2c973a] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 0 of 1 executor > slurm (57) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [f8/43fb15] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 6 of 6 ✔ [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 6 of 6 ✔ [b4/5b9760] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [f3/2c973a] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 0 of 1 executor > slurm (57) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [f8/43fb15] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 6 of 6 ✔ [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 6 of 6 ✔ [b4/5b9760] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [f3/2c973a] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 1 of 1 ✔ executor > slurm (57) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [f8/43fb15] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 6 of 6 ✔ [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 6 of 6 ✔ [b4/5b9760] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [f3/2c973a] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 1 of 1 ✔ -[nf-core/methylseq] Pipeline completed successfully- executor > slurm (57) [- ] NFCORE_METHYLSEQ:FASTA_INDEX_BISMARK_BWAMETH:GUNZIP - [b2/56ccc5] NFC…arkIndex/GCA_013387185.1_ASM1338718v1_genomic.fa) | 1 of 1 ✔ [- ] NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ - [96/bb978a] NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (Caligus_Female_33) | 6 of 6 ✔ [49/e39d88] NFC…E_METHYLSEQ:METHYLSEQ:TRIMGALORE (Caligus_Male_1) | 6 of 6 ✔ [7b/273a79] NFC…LIGN_DEDUP_BISMARK:BISMARK_ALIGN (Caligus_Male_1) | 6 of 6 ✔ [4a/12c42e] NFC…EDUP_BISMARK:BISMARK_DEDUPLICATE (Caligus_Male_1) | 6 of 6 ✔ [a2/9000b3] NFC…LIGN_DEDUP_BISMARK:SAMTOOLS_SORT (Caligus_Male_1) | 6 of 6 ✔ [75/6304a1] NFC…IGN_DEDUP_BISMARK:SAMTOOLS_INDEX (Caligus_Male_1) | 6 of 6 ✔ [d2/2bafbd] NFC…ARK:BISMARK_METHYLATIONEXTRACTOR (Caligus_Male_1) | 6 of 6 ✔ [f8/43fb15] NFC…ISMARK:BISMARK_COVERAGE2CYTOSINE (Caligus_Male_1) | 6 of 6 ✔ [2c/349342] NFC…IGN_DEDUP_BISMARK:BISMARK_REPORT (Caligus_Male_1) | 6 of 6 ✔ [b4/5b9760] NFC…THYLSEQ:FASTQ_ALIGN_DEDUP_BISMARK:BISMARK_SUMMARY | 1 of 1 ✔ [f3/2c973a] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC | 1 of 1 ✔ -[nf-core/methylseq] Pipeline completed successfully- Completed at: 30-Aug-2025 17:45:25 Duration : 2h 26m 51s CPU hours : 337.6 Succeeded : 57 [Run 1] Completed score_min=L,0,-0.2