Module	Section	Sample Name	Source
Bismark	alignment	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/34/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/35/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/33/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Male_1.Caligus_Male_1_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/37/Caligus_Male_1.Caligus_Male_1_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Male_2.Caligus_Male_2_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/36/Caligus_Male_2.Caligus_Male_2_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Male_3.Caligus_Male_3_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/38/Caligus_Male_3.Caligus_Male_3_1_val_1_bismark_bt2_PE_report.txt
Bismark	deduplication	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/28/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/29/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/27/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Male_1.Caligus_Male_1_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/31/Caligus_Male_1.Caligus_Male_1_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Male_2.Caligus_Male_2_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/30/Caligus_Male_2.Caligus_Male_2_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Male_3.Caligus_Male_3_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/32/Caligus_Male_3.Caligus_Male_3_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	methylation_extraction	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/46/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/47/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/45/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Male_1.Caligus_Male_1_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/48/Caligus_Male_1.Caligus_Male_1_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Male_2.Caligus_Male_2_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/49/Caligus_Male_2.Caligus_Male_2_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Male_3.Caligus_Male_3_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/50/Caligus_Male_3.Caligus_Male_3_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	m_bias	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/40/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/41/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/39/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Male_1.Caligus_Male_1_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/42/Caligus_Male_1.Caligus_Male_1_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Male_2.Caligus_Male_2_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/43/Caligus_Male_2.Caligus_Male_2_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Male_3.Caligus_Male_3_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/44/Caligus_Male_3.Caligus_Male_3_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Cutadapt	all_sections	Caligus_Female_11_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/19/Caligus_Female_11_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_11_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/20/Caligus_Female_11_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_22_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/17/Caligus_Female_22_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_22_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/18/Caligus_Female_22_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_33_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/15/Caligus_Female_33_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_33_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/16/Caligus_Female_33_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_1_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/25/Caligus_Male_1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_1_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/26/Caligus_Male_1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_2_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/21/Caligus_Male_2_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_2_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/22/Caligus_Male_2_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_3_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/23/Caligus_Male_3_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Male_3_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/24/Caligus_Male_3_2.fastq.gz_trimming_report.txt
FastQC	all_sections	Caligus_Female_11_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/9/Caligus_Female_11_1_fastqc.zip
FastQC	all_sections	Caligus_Female_11_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/10/Caligus_Female_11_2_fastqc.zip
FastQC	all_sections	Caligus_Female_22_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/13/Caligus_Female_22_1_fastqc.zip
FastQC	all_sections	Caligus_Female_22_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/14/Caligus_Female_22_2_fastqc.zip
FastQC	all_sections	Caligus_Female_33_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/5/Caligus_Female_33_1_fastqc.zip
FastQC	all_sections	Caligus_Female_33_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/6/Caligus_Female_33_2_fastqc.zip
FastQC	all_sections	Caligus_Male_1_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/11/Caligus_Male_1_1_fastqc.zip
FastQC	all_sections	Caligus_Male_1_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/12/Caligus_Male_1_2_fastqc.zip
FastQC	all_sections	Caligus_Male_2_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/7/Caligus_Male_2_1_fastqc.zip
FastQC	all_sections	Caligus_Male_2_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/8/Caligus_Male_2_2_fastqc.zip
FastQC	all_sections	Caligus_Male_3_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/3/Caligus_Male_3_1_fastqc.zip
FastQC	all_sections	Caligus_Male_3_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.6sgtzWeCaX/4/Caligus_Male_3_2_fastqc.zip