File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_pe.bam	54183828	28375183	19457937	6350696	12	1559754	26815429	952772127	509975	121860642	463822	119398463	3214357	707324868
Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_pe.bam	54184805	28377058	19457212	6350526	9	1560385	26816673	952777796	509293	121843503	463585	119398419	3212238	707350758
Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_pe.bam	54183966	28375447	19456937	6351572	10	1559323	26816124	952833933	509365	121857895	463289	119416300	3215768	707371316
Caligus_Male_2.Caligus_Male_2_1_val_1_bismark_bt2_pe.bam	54826897	29168598	18452563	7205726	10	1291495	27877103	884455339	500658	114064741	468021	111034729	3666800	654720390
Caligus_Male_1.Caligus_Male_1_1_val_1_bismark_bt2_pe.bam	54826814	29165524	18455111	7206171	8	1291182	27874342	884387676	500392	114057702	468531	111027998	3668645	654664408
Caligus_Male_3.Caligus_Male_3_1_val_1_bismark_bt2_pe.bam	55823517	29696693	18790761	7336055	8	1336674	28360019	899747664	510055	116037365	476132	112951876	3730950	666041286